| acinetobacter baumannii | Yes | species | bacteria | bacteria | species | 470 | click here |
| acinetobacter guillouiae | Yes | species | bacteria | bacteria | species | 106649 | click here |
| acinetobacter sp. | Yes | species | bacteria | bacteria | species | 472 | click here |
| actinomycetaceae bacterium | Yes | species | | | species | 1898202 | click here |
| aerococcaceae bacterium | Yes | species | | | species | 2053495 | click here |
| aeromonas sp. p2g1 | Yes | no rank | bacteria | bacteria | species | 948519 | click here |
| alternaria alternata | No | species | eukaryota | plants | species | 5599 | click here |
| angiostrongylus cantonensis | Yes | species | eukaryota | invertebrates | species | 6313 | click here |
| ascaridia columbae | Yes | species | eukaryota | invertebrates | species | 65462 | click here |
| ascaridia sp. 0396-01 | Yes | no rank | | | species | 1660386 | click here |
| ascaridia sp. ghl-2013 | Yes | no rank | | | species | 1316655 | click here |
| aspergillus fumigatus | Yes | species | eukaryota | plants | species | 746128 | click here |
| aspergillus niger | Yes | species | eukaryota | plants | species | 5061 | click here |
| aspergillus pseudoviridinutans | Yes | species | | | species | 1517512 | click here |
| aspergillus terreus | Yes | species | eukaryota | plants | species | 33178 | click here |
| atadenovirus sp. | Yes | species | | | species | 2671518 | click here |
| aves polyomavirus 1 | No | species | | | species | 1891747 | click here |
| aves polyomavirus 1 | Yes | species | | | species | 1891747 | click here |
| avian bornavirus | Yes | species | viruses and viroids | viruses | species | 675389 | click here |
| avian bornavirus 1 | Yes | no rank | viruses and viroids | viruses | species | 555866 | click here |
| avian bornavirus 2 | Yes | no rank | viruses and viroids | viruses | species | 555867 | click here |
| avian bornavirus 3 | Yes | no rank | viruses and viroids | viruses | species | 555868 | click here |
| avian bornavirus 4 | Yes | species | viruses and viroids | viruses | species | 555869 | click here |
| avian bornavirus 5 | Yes | no rank | viruses and viroids | viruses | species | 555870 | click here |
| avian coronavirus | Yes | species | viruses and viroids | viruses | species | 694014 | click here |
| avian leukosis virus | Yes | species | viruses and viroids | viruses | species | 11864 | click here |
| avian metaavulavirus 2 | Yes | species | | | species | 2560313 | click here |
| avian metapneumovirus | Yes | species | viruses and viroids | viruses | species | 38525 | click here |
| avian orthoavulavirus 1 | No | species | | | species | 2560319 | click here |
| avian orthoavulavirus 1 | Yes | species | | | species | 2560319 | click here |
| avian orthoreovirus | Yes | species | viruses and viroids | viruses | species | 38170 | click here |
| avian paramyxovirus 2 | Yes | species | viruses and viroids | viruses | species | 35302 | click here |
| avian paramyxovirus 3 | Yes | species | viruses and viroids | viruses | species | 207246 | click here |
| avian paramyxovirus 5 | Yes | species | viruses and viroids | viruses | species | 740710 | click here |
| avian polyomavirus | Yes | species | | | species | 1702318 | click here |
| avian rotavirus a | Yes | no rank | viruses and viroids | viruses | no rank | 31563 | click here |
| avibacterium sp. mccm 01291 | Yes | no rank | bacteria | bacteria | species | 572031 | click here |
| avipoxvirus 2017 | Yes | species | | | species | 2019388 | click here |
| avipoxvirus 3864 | Yes | species | | | species | 2019389 | click here |
| avipoxvirus betim 1 | Yes | species | | | species | 1756707 | click here |
| avipoxvirus clade c | No | species | | | species | 2320697 | click here |
| avipoxvirus cvl | Yes | no rank | viruses and viroids | viruses | species | 365620 | click here |
| avipoxvirus isolate apiii | Yes | no rank | viruses and viroids | viruses | species | 263959 | click here |
| avipoxvirus isolate chile | Yes | species | | | species | 1294095 | click here |
| avipoxvirus isolate new york | Yes | species | | | species | 1294109 | click here |
| avipoxvirus isolate united kingdom | Yes | species | | | species | 1294115 | click here |
| basilea psittacipulmonis | Yes | species | | | species | 1472345 | click here |
| basilea psittacipulmonis dsm 24701 | Yes | | | | no rank | 1072685 | click here |
| basilea sp. | Yes | species | | | species | 1968828 | click here |
| baylisascaris procyonis | Yes | species | eukaryota | invertebrates | species | 6259 | click here |
| beak and feather disease virus | No | species | viruses and viroids | viruses | species | 77856 | click here |
| beak and feather disease virus | Yes | species | viruses and viroids | viruses | species | 77856 | click here |
| betacoronavirus 1 | Yes | species | viruses and viroids | viruses | species | 694003 | click here |
| bisgaard taxon 3 biovar 1 | Yes | no rank | bacteria | bacteria | no rank | 221396 | click here |
| bisgaard taxon 34 | Yes | no rank | bacteria | bacteria | species | 221401 | click here |
| bisgaard taxon 44 | Yes | no rank | bacteria | bacteria | species | 371821 | click here |
| bisgaard taxon 45 | Yes | no rank | bacteria | bacteria | species | 304289 | click here |
| blastocystis sp. | Yes | species | eukaryota | plants | species | 46767 | click here |
| bordetella avium | Yes | species | bacteria | bacteria | species | 521 | click here |
| borna disease virus | Yes | species | viruses and viroids | viruses | species | 12455 | click here |
| budgerigar adenovirus 1 | Yes | species | viruses and viroids | viruses | species | 608831 | click here |
| cacatuid alphaherpesvirus 1 | Yes | species | | | species | 2115842 | click here |
| cacatuid alphaherpesvirus 2 | Yes | species | | | species | 2604840 | click here |
| candida albicans | No | species | eukaryota | plants | species | 5476 | click here |
| candida albicans | Yes | species | eukaryota | plants | species | 5476 | click here |
| candida parapsilosis | Yes | species | eukaryota | plants | species | 5480 | click here |
| candida tropicalis | Yes | species | eukaryota | plants | species | 5482 | click here |
| chaffinch papillomavirus | Yes | species | viruses and viroids | viruses | species | 10577 | click here |
| chlamydia abortus | Yes | species | bacteria | bacteria | species | 83555 | click here |
| chlamydia avium | Yes | species | | | species | 1457141 | click here |
| chlamydia avium 10dc88 | Yes | no rank | | | no rank | 1229831 | click here |
| chlamydia pneumoniae | Yes | species | bacteria | bacteria | species | 83558 | click here |
| chlamydia psittaci | No | species | bacteria | bacteria | species | 83554 | click here |
| chlamydia psittaci | Yes | species | bacteria | bacteria | species | 83554 | click here |
| chlamydia psittaci 03dc29 | Yes | no rank | | | no rank | 1112262 | click here |
| chlamydia psittaci 6bc | Yes | no rank | bacteria | bacteria | no rank | 331636 | click here |
| chlamydia psittaci 84/55 | Yes | no rank | | | no rank | 1218176 | click here |
| chlamydia psittaci 84-8471/1 | Yes | no rank | | | no rank | 1112230 | click here |
| chlamydia psittaci mat116 | Yes | no rank | bacteria | bacteria | no rank | 500464 | click here |
| chlamydia psittaci uga | Yes | | | | no rank | 1055521 | click here |
| chlamydia psittaci vs225 | Yes | no rank | | | no rank | 1218355 | click here |
| chlamydia sp. | Yes | no rank | bacteria | bacteria | species | 35827 | click here |
| circoviridae sp. | Yes | species | | | species | 1954248 | click here |
| cnemidocoptes pilae | Yes | species | | | species | | click here |
| corella adenovirus 1 | Yes | species | | | species | 2603316 | click here |
| corynebacterium sp. | Yes | no rank | bacteria | bacteria | species | 1720 | click here |
| corynebacterium sp. 1340 | Yes | no rank | | | species | 1225435 | click here |
| cryptococcus gattii vgiii | Yes | species | eukaryota | plants | species | 552467 | click here |
| cryptococcus neoformans | Yes | species | eukaryota | plants | species | 5207 | click here |
| cryptococcus neoformans var. grubii | No | varietas | eukaryota | plants | varietas | 178876 | click here |
| cryptosporidium avium | Yes | species | | | species | 1808962 | click here |
| cryptosporidium baileyi | Yes | species | eukaryota | invertebrates | species | 27987 | click here |
| cryptosporidium canis | Yes | species | eukaryota | invertebrates | species | 195482 | click here |
| cryptosporidium environmental sequence | Yes | subspecies | eukaryota | environmental samples | species | 310753 | click here |
| cryptosporidium galli | Yes | species | eukaryota | invertebrates | species | 218119 | click here |
| cryptosporidium meleagridis | Yes | species | eukaryota | invertebrates | species | 93969 | click here |
| cryptosporidium parvum | Yes | species | eukaryota | invertebrates | species | 5807 | click here |
| cryptosporidium sp. | Yes | species | eukaryota | invertebrates | species | 90962 | click here |
| cryptosporidium sp. avian genotype iii | Yes | no rank | eukaryota | invertebrates | species | 796089 | click here |
| cryptosporidium sp. avian genotype v | Yes | no rank | eukaryota | invertebrates | species | 796088 | click here |