| anaplasma phagocytophilum | Yes | species | bacteria | bacteria | species | 948 | click here |
| andracantha gravida | Yes | species | eukaryota | invertebrates | species | 500321 | click here |
| andracantha leucocarboi | Yes | species | | | species | 2047755 | click here |
| andracantha sigma | Yes | species | | | species | 2047751 | click here |
| anisakis simplex | Yes | species | eukaryota | invertebrates | species | 6269 | click here |
| anopheles messeae | Yes | species | eukaryota | invertebrates | species | 41430 | click here |
| apatemon sp. 'jamiesoni' | Yes | no rank | | | species | 1729200 | click here |
| ascocotyle longa | Yes | species | | invertebrates | species | 1343080 | click here |
| aspergillus allahabadii | Yes | species | | | species | 1612426 | click here |
| austrobilharzia variglandis | Yes | species | eukaryota | invertebrates | species | 100588 | click here |
| austrodiplostomum ostrowskiae | Yes | species | | | species | 1343082 | click here |
| avian coronavirus | Yes | species | viruses and viroids | viruses | species | 694014 | click here |
| avian orthoavulavirus 1 | Yes | species | | | species | 2560319 | click here |
| avian orthoreovirus | Yes | species | viruses and viroids | viruses | species | 38170 | click here |
| avian paramyxovirus 2 | Yes | species | viruses and viroids | viruses | species | 35302 | click here |
| avian paramyxovirus 4 | Yes | no rank | viruses and viroids | viruses | no rank | 28274 | click here |
| avipoxvirus isolate alaska | Yes | species | | | species | 1294089 | click here |
| avipoxvirus japanese cormorant/iwakuni/2017 | Yes | species | | | species | 2582417 | click here |
| avipoxvirus japanese cormorant/miyoshi/2017 | Yes | species | | | species | 2582418 | click here |
| avipoxvirus japanese cormorant/yamanashi/2017 | Yes | species | | | species | 2734904 | click here |
| avipoxvirus japanese cormorant/yamanashi/2019 | Yes | species | | | species | 2734905 | click here |
| babesia ugwidiensis | Yes | species | | | species | 2009336 | click here |
| bolbophorus damnificus | Yes | species | eukaryota | invertebrates | species | 186185 | click here |
| candida albicans | Yes | species | eukaryota | plants | species | 5476 | click here |
| chlamydia psittaci | Yes | species | bacteria | bacteria | species | 83554 | click here |
| clinostomum complanatum | Yes | species | eukaryota | invertebrates | species | 235145 | click here |
| contracaecum chubutensis | Yes | species | | | species | 940807 | click here |
| contracaecum microcephalum | Yes | species | eukaryota | invertebrates | species | 142968 | click here |
| contracaecum multipapillatum | Yes | species | eukaryota | invertebrates | species | 59250 | click here |
| contracaecum pelagicum | Yes | species | eukaryota | invertebrates | species | 428553 | click here |
| contracaecum rudolphii | Yes | species | eukaryota | invertebrates | species | 142972 | click here |
| contracaecum rudolphii a bullini et al., 1986 | Yes | no rank | eukaryota | invertebrates | species | 646520 | click here |
| contracaecum rudolphii b bullini et al., 1986 | Yes | no rank | eukaryota | invertebrates | species | 646521 | click here |
| contracaecum septentrionale | Yes | species | eukaryota | invertebrates | species | 142973 | click here |
| contracaecum sp. sm-2009 | Yes | no rank | | | species | 669476 | click here |
| contracaecum spiculigerum | Yes | species | eukaryota | invertebrates | species | 292499 | click here |
| corynosoma hannae | Yes | species | | | species | 1913632 | click here |
| cryptosporidium sp. klj-0 | No | no rank | eukaryota | invertebrates | species | 237904 | click here |
| culex erraticus | Yes | species | eukaryota | invertebrates | species | 42427 | click here |
| culex pipiens | Yes | species | eukaryota | invertebrates | species | 7175 | click here |
| culex quinquefasciatus | Yes | species | eukaryota | invertebrates | species | 7176 | click here |
| culex tarsalis | Yes | species | eukaryota | invertebrates | species | 7177 | click here |
| cyathostoma microspiculum | Yes | species | | | species | 1319807 | click here |
| dnistrovskyi 408 orbivirus | No | species | | | species | 1930308 | click here |
| drepanocephalus auritus | Yes | species | | | species | 1618190 | click here |
| drepanocephalus mexicanus | Yes | species | | | species | 2044279 | click here |
| drepanocephalus spathans | Yes | species | eukaryota | invertebrates | species | 234887 | click here |
| eimeria auritusi | Yes | species | eukaryota | invertebrates | species | 373907 | click here |
| eimeria phalacrocoraxae | Yes | species | eukaryota | invertebrates | species | 373908 | click here |
| environmental samples | Yes | | | environmental samples | no rank | 333811 | click here |
| environmental samples | Yes | | | environmental samples | no rank | 359183 | click here |
| environmental samples | Yes | | | | no rank | 1629145 | click here |
| escherichia albertii | Yes | species | bacteria | bacteria | species | 208962 | click here |
| escherichia coli | No | species | bacteria | bacteria | species | 562 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| eudiplozoon nipponicum | Yes | species | eukaryota | invertebrates | species | 116851 | click here |
| galactosomum lacteum | Yes | species | eukaryota | invertebrates | species | 232670 | click here |
| h5n1 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 102793 | click here |
| haemoproteus sp. | Yes | species | eukaryota | invertebrates | species | 191679 | click here |
| haemoproteus sp. ts-2014a | Yes | no rank | | | species | 1502668 | click here |
| holostephanus dubinini | Yes | species | eukaryota | invertebrates | species | 235158 | click here |
| hysteromorpha triloba | Yes | species | eukaryota | invertebrates | species | 234889 | click here |
| infectious bronchitis virus | Yes | no rank | viruses and viroids | viruses | no rank | 11120 | click here |
| influenza a virus | Yes | species | viruses and viroids | viruses | species | 11320 | click here |
| influenza a virus (a/cormorant/israel/1035/2016(h5n8)) | Yes | no rank | | | no rank | 2005433 | click here |
| influenza a virus (a/cormorant/mongolia/2/2003(h4n6)) | Yes | no rank | | | no rank | 1114284 | click here |
| influenza a virus (a/cormorant/mongolia/22/2004(h3n6)) | Yes | no rank | | | no rank | 1114268 | click here |
| influenza a virus (a/cormorant/mongolia/5/2003(h4n6)) | Yes | no rank | | | no rank | 1114283 | click here |
| influenza a virus (a/cormorant/strilkove-kherson/63/2006(h5n1)) | Yes | no rank | | | no rank | 1205921 | click here |
| influenza a virus (a/double-crested cormorant/california/20119-001/2007(h3n8)) | Yes | no rank | viruses and viroids | viruses | no rank | 569654 | click here |
| influenza a virus (a/great cormorant/qinghai/1/2009(h5n1)) | Yes | no rank | viruses and viroids | viruses | no rank | 871230 | click here |
| influenza a virus (a/great cormorant/tibet/12/2006(h5n1)) | Yes | no rank | viruses and viroids | viruses | no rank | 762420 | click here |
| ixodes uriae | Yes | species | eukaryota | invertebrates | species | 59655 | click here |
| japanese encephalitis virus | Yes | species | viruses and viroids | viruses | species | 11072 | click here |
| klebsiella pneumoniae | Yes | species | bacteria | bacteria | species | 573 | click here |
| leucocytozoon sp. ts-2014a | Yes | no rank | | | species | 1502667 | click here |
| metorchis bilis | Yes | species | eukaryota | invertebrates | species | 475399 | click here |
| metorchis xanthosomus | Yes | species | eukaryota | invertebrates | species | 575209 | click here |
| murray valley encephalitis virus | Yes | species | viruses and viroids | viruses | species | 11079 | click here |
| mycoplasma sp. | Yes | species | bacteria | bacteria | species | 2108 | click here |
| nematoda sp. nkw-2006 | Yes | no rank | eukaryota | invertebrates | species | 399613 | click here |
| neospora caninum | Yes | species | eukaryota | invertebrates | species | 29176 | click here |
| neotropic cormorant aviadenovirus | Yes | species | | | species | 2086357 | click here |
| neotropic cormorant coronavirus | Yes | no rank | | | no rank | 2086356 | click here |
| neotropic cormorant herpesvirus | Yes | species | | | species | 2086349 | click here |
| neottialges evansi | Yes | species | eukaryota | invertebrates | species | 708368 | click here |
| ochlerotatus taeniorhynchus | Yes | species | eukaryota | invertebrates | species | 329105 | click here |
| pasteurella multocida | Yes | species | bacteria | bacteria | species | 747 | click here |
| pectinopygus brevicornis | Yes | species | eukaryota | invertebrates | species | 138914 | click here |
| pectinopygus farallonii | Yes | species | eukaryota | invertebrates | species | 363013 | click here |
| pectinopygus gyricornis | Yes | species | eukaryota | invertebrates | species | 363014 | click here |
| pectinopygus punctatus | Yes | species | eukaryota | invertebrates | species | 380423 | click here |
| pectinopygus setosus | Yes | species | eukaryota | invertebrates | species | 380424 | click here |
| pectinopygus varius | Yes | species | eukaryota | invertebrates | species | 382646 | click here |
| petasiger exaeretus | Yes | species | | | species | 1775823 | click here |
| petasiger phalacrocoracis | Yes | species | eukaryota | invertebrates | species | 235442 | click here |
| petasiger radiatus | Yes | species | | | species | 1775825 | click here |
| phalacrodectes gaudi | Yes | species | eukaryota | invertebrates | species | 708408 | click here |
| plasmodium sp. ts-2014a | Yes | no rank | | | species | 1502673 | click here |
| posthodiplostomum sp. dihm-2017 | Yes | no rank | | | species | 2015734 | click here |