| echinostoma friedi | Yes | species | eukaryota | invertebrates | species | 231582 | click here |
| echinostoma revolutum | Yes | species | eukaryota | invertebrates | species | 48217 | click here |
| eimeria acervulina | Yes | species | eukaryota | invertebrates | species | 5801 | click here |
| eimeria brunetti | Yes | species | eukaryota | invertebrates | species | 51314 | click here |
| eimeria colchici | Yes | species | | | species | | click here |
| eimeria dispersa | Yes | species | eukaryota | invertebrates | species | 857748 | click here |
| eimeria duodenalis | Yes | species | | | species | | click here |
| eimeria hagani | Yes | species | | | species | | click here |
| eimeria langeroni | Yes | species | | | species | | click here |
| eimeria mandali | Yes | species | | | species | | click here |
| eimeria maxima | Yes | species | eukaryota | invertebrates | species | 5804 | click here |
| eimeria mayurai | Yes | species | | | species | | click here |
| eimeria megalostromata | Yes | species | | | species | | click here |
| eimeria mitis | Yes | species | eukaryota | invertebrates | species | 44415 | click here |
| eimeria mivati | Yes | species | eukaryota | invertebrates | species | 54117 | click here |
| eimeria necatrix | Yes | species | eukaryota | invertebrates | species | 51315 | click here |
| eimeria pacifica | Yes | species | | | species | | click here |
| eimeria papillata | Yes | species | eukaryota | invertebrates | species | 162632 | click here |
| eimeria pavonina | Yes | species | | | species | 1141916 | click here |
| eimeria pavonis | Yes | species | | | species | | click here |
| eimeria phasiani | Yes | species | | | species | | click here |
| eimeria praecox | Yes | species | eukaryota | invertebrates | species | 51316 | click here |
| eimeria sp. phasianus colchicus/24-6.10-s3 | Yes | no rank | eukaryota | invertebrates | species | 909807 | click here |
| eimeria sp. phasianus colchicus/73-10-s3 | Yes | no rank | eukaryota | invertebrates | species | 909808 | click here |
| eimeria sp. phasianus colchicus/73-11-s3 | Yes | no rank | eukaryota | invertebrates | species | 909809 | click here |
| eimeria sp. phasianus colchicus/73-2-s3 | Yes | no rank | eukaryota | invertebrates | species | 909810 | click here |
| eimeria sp. phasianus colchicus/73-8-s3 | Yes | no rank | eukaryota | invertebrates | species | 909811 | click here |
| eimeria tenella | Yes | species | eukaryota | invertebrates | species | 5802 | click here |
| eimeria zuernii | Yes | species | eukaryota | invertebrates | species | 310761 | click here |
| elusimicrobium sp. an273 | Yes | no rank | | | species | 1965617 | click here |
| encephalomyocarditis virus | Yes | no rank | viruses and viroids | viruses | no rank | 12104 | click here |
| enorma massiliensis | Yes | species | | | species | 1472761 | click here |
| enorma sp. marseille-p3242 | Yes | no rank | | | species | 1871019 | click here |
| enteractinococcus helveticum | Yes | species | | | species | 1837282 | click here |
| enteric coronavirus | Yes | species | | | species | 28293 | click here |
| enterobacter asburiae | Yes | species | bacteria | bacteria | species | 61645 | click here |
| enterobacter cloacae | Yes | species | bacteria | bacteria | species | 550 | click here |
| enterobacter cloacae complex 'hoffmann cluster iv' | Yes | no rank | | | species | 1812935 | click here |
| enterobacter hormaechei | Yes | species | bacteria | bacteria | species | 158836 | click here |
| enterobacter sp. | Yes | species | bacteria | bacteria | species | 42895 | click here |
| enterobacter sp. 12b.ch | Yes | no rank | | | species | 1867061 | click here |
| enterobacter xiangfangensis | Yes | species | | | species | 1296536 | click here |
| enterobacteriaceae bacterium | Yes | species | | | species | 1849603 | click here |
| enterococcus aquimarinus | Yes | species | bacteria | bacteria | species | 328396 | click here |
| enterococcus avium | Yes | species | bacteria | bacteria | species | 33945 | click here |
| enterococcus casseliflavus | Yes | species | bacteria | bacteria | species | 37734 | click here |
| enterococcus cecorum | Yes | species | bacteria | bacteria | species | 44008 | click here |
| enterococcus cecorum dsm 20682 = atcc 43198 | Yes | no rank | | | no rank | 1121864 | click here |
| enterococcus diestrammenae | Yes | species | | | species | 1155073 | click here |
| enterococcus durans | Yes | species | bacteria | bacteria | species | 53345 | click here |
| enterococcus faecalis | Yes | species | bacteria | bacteria | species | 1351 | click here |
| enterococcus faecium | Yes | species | bacteria | bacteria | species | 1352 | click here |
| enterococcus faecium engen0001 | Yes | no rank | | | no rank | 1138898 | click here |
| enterococcus faecium engen0005 | Yes | no rank | | | no rank | 1138880 | click here |
| enterococcus faecium engen0043 | Yes | no rank | | | no rank | 1138919 | click here |
| enterococcus faecium engen0044 | Yes | no rank | | | no rank | 1138918 | click here |
| enterococcus faecium engen0048 | Yes | no rank | | | no rank | 1138929 | click here |
| enterococcus faecium engen0171 | Yes | no rank | | | no rank | 1157466 | click here |
| enterococcus faecium engen0172 | Yes | no rank | | | no rank | 1157467 | click here |
| enterococcus faecium engen0173 | Yes | no rank | | | no rank | 1157468 | click here |
| enterococcus faecium engen0174 | Yes | no rank | | | no rank | 1157469 | click here |
| enterococcus faecium engen0175 | Yes | no rank | | | no rank | 1157470 | click here |
| enterococcus faecium engen0176 | Yes | no rank | | | no rank | 1157471 | click here |
| enterococcus faecium engen0184 | Yes | no rank | | | no rank | 1157479 | click here |
| enterococcus gallinarum | Yes | species | bacteria | bacteria | species | 1353 | click here |
| enterococcus hirae | Yes | species | bacteria | bacteria | species | 1354 | click here |
| enterococcus lactis | Yes | species | bacteria | bacteria | species | 357441 | click here |
| enterococcus mundtii | Yes | species | bacteria | bacteria | species | 53346 | click here |
| enterococcus sp. 1 as723018 | Yes | no rank | | | species | 1198032 | click here |
| enterococcus sp. ak61 | Yes | no rank | bacteria | bacteria | species | 193505 | click here |
| enterococcus sp. ak89 | Yes | no rank | bacteria | bacteria | species | 193504 | click here |
| enterococcus sp. as 623021 | Yes | no rank | | | species | 1224314 | click here |
| enterococcus sp. as 821002 | Yes | no rank | | | species | 1224315 | click here |
| enterococcus sp. cu12b | Yes | no rank | | | species | 1857215 | click here |
| enterococcus sp. cu9d | Yes | no rank | | | species | 1857218 | click here |
| enterococcus sp. jm4c | Yes | no rank | | | species | 1857217 | click here |
| enterococcus sp. jm9b | Yes | no rank | | | species | 1857216 | click here |
| enterococcus sp. qd-m1 | Yes | no rank | | | species | 1552953 | click here |
| enterococcus thailandicus | Yes | species | bacteria | bacteria | species | 417368 | click here |
| enterocytozoon bieneusi | Yes | species | eukaryota | plants | species | 31281 | click here |
| enterocytozoon sp. | Yes | species | eukaryota | plants | species | 75831 | click here |
| enterovirus f | Yes | species | | | species | 1330520 | click here |
| environmental samples | Yes | | | environmental samples | no rank | 333811 | click here |
| environmental samples | Yes | | | environmental samples | no rank | 359183 | click here |
| environmental samples | Yes | | | | no rank | 1629145 | click here |
| epidermoptes bifurcata | Yes | species | | | species | | click here |
| epidermoptes bilobatus | Yes | species | | | species | | click here |
| erysipelatoclostridium sp. an15 | Yes | no rank | | | species | 1965566 | click here |
| erysipelatoclostridium sp. an173 | Yes | no rank | | | species | 1965571 | click here |
| erysipelothrix rhusiopathiae | Yes | species | bacteria | bacteria | species | 1648 | click here |
| erysipelotrichaceae bacterium | Yes | species | | | species | 2049044 | click here |
| escherichia albertii | Yes | species | bacteria | bacteria | species | 208962 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| escherichia coli apec imt5155 | Yes | no rank | | | no rank | 1329907 | click here |
| escherichia coli apec o1 | Yes | no rank | bacteria | bacteria | no rank | 405955 | click here |
| escherichia coli apec o18 | Yes | no rank | | | no rank | 1401688 | click here |
| escherichia coli apec o2-211 | Yes | no rank | | | no rank | 1954351 | click here |
| escherichia coli o08 | Yes | no rank | | | no rank | 1227814 | click here |
| escherichia coli o157 | Yes | no rank | | | no rank | 1045010 | click here |
| escherichia coli o157:h7 | Yes | no rank | bacteria | bacteria | no rank | 83334 | click here |