| aedes albopictus | Yes | species | eukaryota | invertebrates | species | 7160 | click here |
| aedes vexans | Yes | species | eukaryota | invertebrates | species | 7163 | click here |
| anopheles punctipennis | Yes | species | eukaryota | invertebrates | species | 102899 | click here |
| anopheles quadrimaculatus | Yes | species | eukaryota | invertebrates | species | 7166 | click here |
| aspergillus fumigatus | Yes | species | eukaryota | plants | species | 746128 | click here |
| aviadenovirus sp. | Yes | species | | | species | 2217649 | click here |
| avian orthoavulavirus 1 | Yes | species | | | species | 2560319 | click here |
| avipoxvirus isolate hungary | Yes | species | | | species | 1294100 | click here |
| beak and feather disease virus | Yes | species | viruses and viroids | viruses | species | 77856 | click here |
| capillaria tenuissima | Yes | species | eukaryota | invertebrates | species | 455385 | click here |
| chicken astrovirus | Yes | species | viruses and viroids | viruses | species | 336959 | click here |
| columbid alphaherpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 93386 | click here |
| cryptosporidium parvum | Yes | species | eukaryota | invertebrates | species | 5807 | click here |
| culex pipiens | Yes | species | eukaryota | invertebrates | species | 7175 | click here |
| culex pipiens pipiens | Yes | subspecies | eukaryota | invertebrates | subspecies | 38569 | click here |
| cyathostoma americana | Yes | species | | | species | 1827351 | click here |
| degeeriella nisus | Yes | species | | | species | 2030478 | click here |
| eastern equine encephalitis virus | Yes | species | viruses and viroids | viruses | species | 11021 | click here |
| enterococcus faecalis | Yes | species | bacteria | bacteria | species | 1351 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| h5n1 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 102793 | click here |
| h5n2 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 119220 | click here |
| h7n9 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 333278 | click here |
| h9n2 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 102796 | click here |
| haemoproteus elani | Yes | species | eukaryota | invertebrates | species | 702360 | click here |
| haemoproteus sp. | Yes | species | eukaryota | invertebrates | species | 191679 | click here |
| haemoproteus sp. 1005-31736 | Yes | no rank | eukaryota | invertebrates | species | 702361 | click here |
| haemoproteus sp. 1204-63687 | Yes | no rank | eukaryota | invertebrates | species | 702362 | click here |
| haemoproteus sp. 1204-63688 | Yes | no rank | eukaryota | invertebrates | species | 702363 | click here |
| haemoproteus sp. 1204-63792 | Yes | no rank | eukaryota | invertebrates | species | 702364 | click here |
| hieracolichus nisi | Yes | species | eukaryota | invertebrates | species | 474200 | click here |
| influenza a virus | Yes | species | viruses and viroids | viruses | species | 11320 | click here |
| influenza a virus (a/cooper's hawk/minnesota/198225/2015(h5n2)) | Yes | no rank | | | no rank | 1763703 | click here |
| influenza a virus (a/crested goshawk/hong kong/458/2007(h5n1)) | Yes | no rank | viruses and viroids | viruses | no rank | 573966 | click here |
| influenza a virus (a/eurasian sparrowhawk/korea/q94/2011(h5n1)) | Yes | no rank | viruses and viroids | viruses | no rank | 1092969 | click here |
| influenza a virus (a/goshawk/tochigi/64/2011(h5n1)) | Yes | no rank | | | no rank | 1104994 | click here |
| influenza a virus (a/northern goshawk/mie/2412c007/2016(h5n6)) | Yes | no rank | | | no rank | 2009207 | click here |
| influenza a virus (a/northern goshawk/tochigi/0912a004/2016(h5n6)) | Yes | no rank | | | no rank | 2016238 | click here |
| leucocytozoon buteonis | Yes | species | eukaryota | invertebrates | species | 763457 | click here |
| leucocytozoon sp. | Yes | species | | | species | 1504291 | click here |
| leucocytozoon sp. acge01 | Yes | no rank | | | species | 1582018 | click here |
| leucocytozoon sp. acge02 | Yes | no rank | | | species | 1582019 | click here |
| leucocytozoon sp. acge03 | Yes | no rank | | | species | 1582020 | click here |
| leucocytozoon sp. asi-2012 | Yes | no rank | | | species | 1215358 | click here |
| leucocytozoon sp. l-acni1 | Yes | no rank | eukaryota | invertebrates | species | 447577 | click here |
| leucocytozoon toddi | Yes | species | eukaryota | invertebrates | species | 289426 | click here |
| mycobacterium avium | Yes | species | bacteria | bacteria | species | 1764 | click here |
| mycoplasma gypis | Yes | species | bacteria | bacteria | species | 92404 | click here |
| mycoplasma lipofaciens | Yes | species | bacteria | bacteria | species | 114884 | click here |
| mycoplasma sp. | Yes | species | bacteria | bacteria | species | 2108 | click here |
| neodiplostomum americanum | Yes | species | | | species | 2003671 | click here |
| neottialges vitzthumi | Yes | species | eukaryota | invertebrates | species | 474251 | click here |
| ornithobacterium rhinotracheale | Yes | species | bacteria | bacteria | species | 28251 | click here |
| plasmodium circumflexum | Yes | species | | | species | 1075167 | click here |
| plasmodium matutinum | Yes | species | | | species | 2033607 | click here |
| plasmodium sp. 1 ych-2014 | Yes | no rank | | | species | 1442608 | click here |
| plasmodium sp. 1393 | Yes | no rank | eukaryota | invertebrates | species | 498830 | click here |
| plasmodium sp. asi-2012 | Yes | no rank | | | species | 1215359 | click here |
| plasmodium sp. butbut02 | Yes | no rank | | | species | 1647179 | click here |
| plasmodium sp. ku147 | Yes | no rank | | | species | 1431680 | click here |
| plasmodium sp. ku81 | Yes | no rank | | | species | 1136733 | click here |
| plasmodium sp. wa15 | Yes | no rank | eukaryota | invertebrates | species | 570795 | click here |
| plasmodium sp. wa2 | Yes | no rank | eukaryota | invertebrates | species | 570800 | click here |
| salmonella enterica | Yes | species | bacteria | bacteria | species | 28901 | click here |
| salmonella enterica subsp. enterica serovar havana | Yes | no rank | bacteria | bacteria | no rank | 179997 | click here |
| salmonella enterica subsp. enterica serovar typhimurium | Yes | no rank | bacteria | bacteria | no rank | 90371 | click here |
| sarcocystis calchasi | Yes | species | | | species | 1344799 | click here |
| sarcocystis columbae | Yes | species | eukaryota | invertebrates | species | 796689 | click here |
| sarcocystis cornixi | Yes | species | eukaryota | invertebrates | species | 674456 | click here |
| sarcocystis dispersa | Yes | species | eukaryota | invertebrates | species | 103343 | click here |
| sarcocystis sp. | Yes | species | eukaryota | invertebrates | species | 59669 | click here |
| sarcocystis sp. ch13-04 | Yes | no rank | eukaryota | invertebrates | species | 545074 | click here |
| sarcocystis sp. ch1918-03 | Yes | no rank | eukaryota | invertebrates | species | 545075 | click here |
| sarcocystis sp. ch255-04 | Yes | no rank | eukaryota | invertebrates | species | 545076 | click here |
| sarcocystis sp. ch318-04 | Yes | no rank | eukaryota | invertebrates | species | 545077 | click here |
| sarcocystis sp. ch327-04 | Yes | no rank | eukaryota | invertebrates | species | 545078 | click here |
| sarcocystis sp. ch47-04 | Yes | no rank | eukaryota | invertebrates | species | 545079 | click here |
| sarcocystis sp. ex accipiter cooperii | Yes | no rank | | | species | 1932786 | click here |
| sarcocystis turdusi | Yes | species | | | species | 1235859 | click here |
| serratospiculum tendo | Yes | species | eukaryota | invertebrates | species | 284330 | click here |
| staphylococcus aureus | Yes | species | bacteria | bacteria | species | 1280 | click here |
| toxoplasma gondii | Yes | species | eukaryota | invertebrates | species | 5811 | click here |
| trichomonas gallinae | Yes | species | eukaryota | invertebrates | species | 56777 | click here |
| trichomonas sp. | Yes | species | | | species | 1987932 | click here |
| trichomonas sp. jsm-2013 | Yes | no rank | | | species | 1441041 | click here |
| trypanosoma avium | Yes | species | eukaryota | invertebrates | species | 43998 | click here |
| trypanosoma corvi | Yes | species | eukaryota | invertebrates | species | 263005 | click here |
| trypanosoma sp. ku81 | Yes | no rank | | | species | 1136734 | click here |
| uncultured chlamydia sp. | Yes | no rank | bacteria | environmental samples | species | 199738 | click here |
| west nile virus | Yes | species | viruses and viroids | viruses | species | 11082 | click here |