| [arcobacter] porcinus | No | species | | | species | 1935204 | click here |
| [pasteurella] aerogenes | No | species | bacteria | bacteria | species | 749 | click here |
| aalivirus a | No | species | | | species | 2169685 | click here |
| acholeplasma modicum | No | species | bacteria | bacteria | species | 2150 | click here |
| acinetobacter baumannii | No | species | bacteria | bacteria | species | 470 | click here |
| acinetobacter calcoaceticus | No | species | bacteria | bacteria | species | 471 | click here |
| acinetobacter indicus | No | species | bacteria | bacteria | species | 756892 | click here |
| actinobacillus anseriformium | No | no rank | bacteria | bacteria | species | 221404 | click here |
| actinobacillus anseriformium biovar 1 | No | no rank | bacteria | bacteria | no rank | 221398 | click here |
| actinobacillus anseriformium biovar 2 | No | no rank | bacteria | bacteria | no rank | 221399 | click here |
| adeno-associated virus | No | species | viruses and viroids | viruses | species | 272636 | click here |
| aedes aegypti | No | species | eukaryota | invertebrates | species | 7159 | click here |
| aeromonas caviae | No | species | bacteria | bacteria | species | 648 | click here |
| aeromonas veronii | No | species | bacteria | bacteria | species | 654 | click here |
| aeromonas veronii bv. sobria | No | no rank | bacteria | bacteria | no rank | 114517 | click here |
| anas platyrhynchos | No | species | eukaryota | vertebrates | species | 8839 | click here |
| anaticola crassicornis | No | species | eukaryota | invertebrates | species | 160206 | click here |
| anatid herpesvirus 1 | No | species | viruses and viroids | viruses | species | 104388 | click here |
| anatoecus dentatus | No | species | | | species | 1451298 | click here |
| anatoecus sp. kpj-2001 | No | no rank | eukaryota | invertebrates | species | 179146 | click here |
| anatoecus sp. kpj-2002 | No | no rank | eukaryota | invertebrates | species | 209282 | click here |
| anatoecus sp. ut01 | No | no rank | eukaryota | invertebrates | species | 160080 | click here |
| anser anser polyomavirus 1 | No | species | | | species | 1891746 | click here |
| anseriform dependoparvovirus 1 | No | species | | | species | 1511895 | click here |
| apatemon sp. 'jamiesoni' | No | no rank | | | species | 1729200 | click here |
| aquatic bird bornavirus 2 | No | no rank | | | no rank | 1884917 | click here |
| arcobacter cibarius | No | species | bacteria | bacteria | species | 255507 | click here |
| arcobacter cryaerophilus | No | species | bacteria | bacteria | species | 28198 | click here |
| arcobacter thereius | No | species | bacteria | bacteria | species | 544718 | click here |
| aspergillus flavus | No | species | eukaryota | plants | species | 5059 | click here |
| aspergillus fumigatus | No | species | eukaryota | plants | species | 746128 | click here |
| aspergillus niger | No | species | eukaryota | plants | species | 5061 | click here |
| australapatemon niewiadomski | No | species | | | species | 1729198 | click here |
| avastrovirus 1 | No | species | | | species | 1239437 | click here |
| avastrovirus 2 | No | species | | | species | 1239438 | click here |
| avastrovirus 3 | No | species | | | species | 1239439 | click here |
| avian bornavirus | No | species | viruses and viroids | viruses | species | 675389 | click here |
| avian coronavirus | No | species | viruses and viroids | viruses | species | 694014 | click here |
| avian gyrovirus 13 | No | species | | | species | 2781374 | click here |
| avian hepatitis e virus | No | no rank | viruses and viroids | viruses | no rank | 172851 | click here |
| avian leukosis virus | No | species | viruses and viroids | viruses | species | 11864 | click here |
| avian metaavulavirus 6 | No | species | | | species | 2560316 | click here |
| avian metaavulavirus 8 | No | species | | | species | 2560318 | click here |
| avian metapneumovirus | No | species | viruses and viroids | viruses | species | 38525 | click here |
| avian metapneumovirus type c | No | no rank | viruses and viroids | viruses | no rank | 227731 | click here |
| avian nephritis virus | No | species | | | species | 1354735 | click here |
| avian nephritis virus 1 | No | no rank | viruses and viroids | viruses | no rank | 336960 | click here |
| avian nephritis virus 2 | No | no rank | viruses and viroids | viruses | no rank | 336961 | click here |
| avian orthoavulavirus 1 | No | species | | | species | 2560319 | click here |
| avian orthoreovirus | No | species | viruses and viroids | viruses | species | 38170 | click here |
| avian paraavulavirus 4 | No | species | | | species | 2560328 | click here |
| avian paramyxovirus 14 | No | no rank | | | no rank | 1928005 | click here |
| avian paramyxovirus 4 | No | no rank | viruses and viroids | viruses | no rank | 28274 | click here |
| avian paramyxovirus 6 | No | species | viruses and viroids | viruses | species | 157619 | click here |
| avian paramyxovirus 9 | No | species | viruses and viroids | viruses | species | 580247 | click here |
| avian rotavirus a | No | no rank | viruses and viroids | viruses | no rank | 31563 | click here |
| avihepatovirus a | No | species | viruses and viroids | viruses | species | 691956 | click here |
| avipoxvirus dx | No | species | | | species | 1496300 | click here |
| avipoxvirus isolate new york | No | species | | | species | 1294109 | click here |
| avipoxvirus isolate wisconsin | No | species | | | species | 1294119 | click here |
| avipoxvirus mz-2014 | No | species | | | species | 1569592 | click here |
| avipoxvirus sp. | No | species | | | species | 1928336 | click here |
| avipoxvirus td | No | species | | | species | 1496301 | click here |
| avipoxvirus xl | No | species | | | species | 1496299 | click here |
| bacillus fordii | No | species | bacteria | bacteria | species | 254759 | click here |
| bacillus paramycoides | No | species | | | species | 2026194 | click here |
| bacillus sp. w4 | No | no rank | bacteria | bacteria | species | 293448 | click here |
| bacillus subtilis | No | species | bacteria | bacteria | species | 1423 | click here |
| bacterium 'new zealand a' | No | no rank | bacteria | bacteria | species | 292508 | click here |
| bacterium 'new zealand b' | No | no rank | bacteria | bacteria | species | 292506 | click here |
| bacterium 'new zealand c' | No | no rank | bacteria | bacteria | species | 292507 | click here |
| bacterium 'new zealand d' | No | no rank | bacteria | bacteria | species | 292509 | click here |
| baiyangdian virus | No | no rank | | | no rank | 1002900 | click here |
| bifidobacterium pseudolongum subsp. globosum | No | subspecies | bacteria | bacteria | subspecies | 1690 | click here |
| bilharziella polonica | No | species | eukaryota | invertebrates | species | 100590 | click here |
| bird metagenome | No | species | | | species | 1833763 | click here |
| bisgaard taxon 14 | No | no rank | bacteria | bacteria | species | 28156 | click here |
| bisgaard taxon 2 | No | no rank | bacteria | bacteria | species | 28157 | click here |
| blastocystis pythoni | No | species | eukaryota | plants | species | 82343 | click here |
| blastocystis sp. | No | species | eukaryota | plants | species | 46767 | click here |
| blastocystis sp. subtype 1 | No | no rank | eukaryota | plants | species | 944036 | click here |
| blastocystis sp. subtype 2 | No | no rank | eukaryota | plants | species | 944160 | click here |
| blastocystis sp. subtype 3 | No | no rank | eukaryota | plants | species | 944168 | click here |
| blastocystis sp. subtype 7 | No | no rank | | | species | 1076755 | click here |
| bordetella avium | No | species | bacteria | bacteria | species | 521 | click here |
| borna disease virus | No | species | viruses and viroids | viruses | species | 12455 | click here |
| borreliella burgdorferi | No | species | bacteria | bacteria | species | 139 | click here |
| borreliella burgdorferi | Yes | species | bacteria | bacteria | species | 139 | click here |
| bovine coronavirus | No | no rank | viruses and viroids | viruses | no rank | 11128 | click here |
| brachyspira alvinipulli | No | species | bacteria | bacteria | species | 84379 | click here |
| brachyspira hampsonii | No | species | | | species | 1287055 | click here |
| brachyspira hyodysenteriae | No | species | bacteria | bacteria | species | 159 | click here |
| brachyspira innocens | No | species | bacteria | bacteria | species | 13264 | click here |
| brachyspira intermedia | No | species | bacteria | bacteria | species | 84377 | click here |
| brachyspira pilosicoli | No | species | bacteria | bacteria | species | 52584 | click here |
| brachyspira pulli | No | species | bacteria | bacteria | species | 310721 | click here |
| brachyspira sp. 10363/4 | No | no rank | bacteria | bacteria | species | 988939 | click here |
| brachyspira sp. 21330/2 | No | no rank | bacteria | bacteria | species | 988940 | click here |
| brachyspira sp. 24916/1 | No | no rank | bacteria | bacteria | species | 988941 | click here |
| brachyspira sp. 9757/1 | No | no rank | bacteria | bacteria | species | 988942 | click here |