| anatid herpesvirus 1 | Yes | species | viruses and viroids | viruses | species | 104388 | click here |
| avian bornavirus | Yes | species | viruses and viroids | viruses | species | 675389 | click here |
| avian orthoavulavirus 1 | Yes | species | | | species | 2560319 | click here |
| avian paramyxovirus 4 | Yes | no rank | viruses and viroids | viruses | no rank | 28274 | click here |
| avipoxvirus isolate wisconsin | Yes | species | | | species | 1294119 | click here |
| avipoxvirus sp. | Yes | species | | | species | 1928336 | click here |
| cryptosporidium sp. | Yes | species | eukaryota | invertebrates | species | 90962 | click here |
| escherichia albertii | Yes | species | bacteria | bacteria | species | 208962 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| fowl aviadenovirus 4 | Yes | no rank | viruses and viroids | viruses | no rank | 130663 | click here |
| freyana sp. n. ad630 | Yes | no rank | eukaryota | invertebrates | species | 482783 | click here |
| h5n1 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 102793 | click here |
| h5n2 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 119220 | click here |
| h5n6 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 329376 | click here |
| h5n8 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 232441 | click here |
| h6n2 subtype | Yes | no rank | viruses and viroids | viruses | no rank | 119213 | click here |
| influenza a virus | Yes | species | viruses and viroids | viruses | species | 11320 | click here |
| influenza a virus (a/mandarin duck/gifu/2112d001/2014(h5n8)) | Yes | no rank | | | no rank | 1615968 | click here |
| influenza a virus (a/mandarin duck/korea/468/2011(h7n3)) | Yes | no rank | viruses and viroids | viruses | no rank | 1055171 | click here |
| influenza a virus (a/mandarin duck/korea/k10-480/2010(h5n1)) | Yes | no rank | viruses and viroids | viruses | no rank | 998523 | click here |
| influenza a virus (a/mandarin duck/korea/k10-483/2010(h5n1)) | Yes | no rank | viruses and viroids | viruses | no rank | 998524 | click here |
| influenza a virus (a/mandarin duck/korea/k10-485/2010(h5n1)) | Yes | no rank | viruses and viroids | viruses | no rank | 998525 | click here |
| influenza a virus (a/mandarin duck/korea/k10-515/2011(h5n1)) | Yes | no rank | viruses and viroids | viruses | no rank | 998526 | click here |
| influenza a virus (a/mandarin duck/korea/k12-256/2012(h9n2)) | Yes | no rank | | | no rank | 1646370 | click here |
| influenza a virus (a/mandarin duck/korea/psc24-24/2010(h5n1)) | Yes | no rank | | | no rank | 1155088 | click here |
| influenza a virus (a/mandarin duck/korea/q2/2011(h5n1)) | Yes | no rank | viruses and viroids | viruses | no rank | 1092970 | click here |
| influenza a virus (a/mandarin duck/korea/q525/2010(h5n1)) | Yes | no rank | viruses and viroids | viruses | no rank | 1092971 | click here |
| influenza a virus (a/mandarin duck/shanghai/pd4/2016(h5n6)) | Yes | no rank | | | no rank | 2014592 | click here |
| influenza a virus (a/mandarin duck/singapore/805_f-72_7/1993(h10n5)) | Yes | no rank | | | no rank | 2025035 | click here |
| influenza a virus (a/mandarin duck/tochigi/0902c033/2017(h5n6)) | Yes | no rank | | | no rank | 2017706 | click here |
| influenza a virus (a/wood duck/nova scotia/00738/2010(h3n8)) | Yes | no rank | | | no rank | 1285027 | click here |
| influenza a virus (a/wood duck/ohio/11os2099/2011(mixed)) | Yes | no rank | | | no rank | 1283788 | click here |
| influenza a virus (a/wood duck/ohio/13os3300/2013(h3n8)) | Yes | no rank | | | no rank | 1473482 | click here |
| influenza a virus (a/wood duck/ohio/423/2004(h5n1)) | Yes | no rank | viruses and viroids | viruses | no rank | 496017 | click here |
| influenza a virus (a/wood duck/ohio/623/2004(h5n1)) | Yes | no rank | viruses and viroids | viruses | no rank | 1003444 | click here |
| influenza a virus (a/wood duck/oregon/ah0007244/2015(h5n2)) | Yes | no rank | | | no rank | 1763731 | click here |
| influenza a virus (a/wood duck/oregon/ah0007257/2015(h5n2)) | Yes | no rank | | | no rank | 1763732 | click here |
| influenza a virus (a/wood duck/oregon/ah0007263/2015(h5n2)) | Yes | no rank | | | no rank | 1763733 | click here |
| influenza a virus (a/wood duck/wisconsin/10os2778/2010(h3n8)) | Yes | no rank | | | no rank | 1267671 | click here |
| influenza a virus (a/wood duck/wisconsin/11os2912/2011(h3n6)) | Yes | no rank | | | no rank | 1460781 | click here |
| influenza a virus (a/wood duck/wisconsin/11os3443/2011(h11n9)) | Yes | no rank | | | no rank | 1460745 | click here |
| influenza a virus (a/wood duck/wisconsin/147/1976(h4n2)) | Yes | no rank | | | no rank | 1445213 | click here |
| influenza a virus (a/wood duck/wisconsin/158/1980(h3n2)) | Yes | no rank | | | no rank | 1445135 | click here |
| japanese encephalitis virus | Yes | species | viruses and viroids | viruses | species | 11072 | click here |
| leucocytozoon simondi | Yes | species | eukaryota | invertebrates | species | 195948 | click here |
| leucocytozoon sp. aixgal01 | Yes | no rank | | | species | 1979325 | click here |
| pasteurella multocida | Yes | species | bacteria | bacteria | species | 747 | click here |
| pigeon circovirus | Yes | species | | viruses | species | 1414603 | click here |
| plasmodium circumflexum | Yes | species | | | species | 1075167 | click here |
| pseudomonas aeruginosa | Yes | species | bacteria | bacteria | species | 287 | click here |
| psilostomidae sp. na2 | Yes | no rank | | | species | 1775830 | click here |
| psilostomidae sp. na3 | Yes | no rank | | | species | 1775831 | click here |
| rectijanua sp. n. ad629 | Yes | no rank | eukaryota | invertebrates | species | 482802 | click here |
| ross's goose hepatitis b virus | Yes | no rank | viruses and viroids | viruses | no rank | 259931 | click here |
| schistosomatidae sp. 2 w165 | Yes | no rank | | | species | 2041285 | click here |
| sphaeridiotrema globulus | Yes | species | | | species | 885333 | click here |
| staphylococcus aureus | Yes | species | bacteria | bacteria | species | 1280 | click here |
| toxoplasma gondii | Yes | species | eukaryota | invertebrates | species | 5811 | click here |
| trichobilharzia sp. c hap_2014 | Yes | no rank | | | species | 1570004 | click here |
| trichobilharzia sp. c jn-2015 | Yes | no rank | | | species | 1642431 | click here |
| variovorax sp. | Yes | species | | | species | 1871043 | click here |
| west nile virus | Yes | species | viruses and viroids | viruses | species | 11082 | click here |