| acremonium variecolor | Yes | species | | | species | 1271793 | click here |
| aeromonas hydrophila | Yes | species | bacteria | bacteria | species | 644 | click here |
| amblyomma dissimile | Yes | species | eukaryota | invertebrates | species | 251381 | click here |
| amblyomma rotundatum | Yes | species | eukaryota | invertebrates | species | 251395 | click here |
| amblyomma sp. usntc 122344 | Yes | no rank | eukaryota | invertebrates | species | 251403 | click here |
| armillifer agkistrodontis | Yes | species | eukaryota | invertebrates | species | 592791 | click here |
| aspergillus flavus | Yes | species | eukaryota | plants | species | 5059 | click here |
| bacillus megaterium | Yes | species | bacteria | bacteria | species | 1404 | click here |
| bacillus sp. | Yes | species | bacteria | bacteria | species | 1409 | click here |
| beauveria bassiana | Yes | species | eukaryota | plants | species | 176275 | click here |
| candida orthopsilosis | Yes | species | eukaryota | plants | species | 273371 | click here |
| caryospora bigenetica | Yes | species | eukaryota | invertebrates | species | 86281 | click here |
| caryospora cf. bigenetica | Yes | no rank | | | species | 1864624 | click here |
| caryospora cf. bigenetica jb-2013 | Yes | no rank | | | species | 1549418 | click here |
| chlamydia pneumoniae | Yes | species | bacteria | bacteria | species | 83558 | click here |
| citrobacter freundii | Yes | species | bacteria | bacteria | species | 546 | click here |
| citrobacter sp. | Yes | species | bacteria | bacteria | species | 1896336 | click here |
| cladosporium oxysporum | Yes | species | eukaryota | plants | species | 29919 | click here |
| cladosporium sp. | Yes | species | | | species | 1707700 | click here |
| clostridioides mangenotii tr | Yes | no rank | | | no rank | 1408823 | click here |
| clostridium perfringens | Yes | species | bacteria | bacteria | species | 1502 | click here |
| crotalus paramyxovirus | Yes | species | | | species | 2213020 | click here |
| cryptosporidium muris | Yes | species | eukaryota | invertebrates | species | 5808 | click here |
| cryptosporidium serpentis | Yes | species | eukaryota | invertebrates | species | 83999 | click here |
| cryptosporidium tyzzeri | Yes | species | eukaryota | invertebrates | species | 756076 | click here |
| eimeria nieschulzi | Yes | species | eukaryota | invertebrates | species | 44416 | click here |
| enterococcus faecalis | Yes | species | bacteria | bacteria | species | 1351 | click here |
| enterococcus sp. tr | Yes | no rank | | | species | 1417988 | click here |
| epicoccum sorghinum | Yes | species | eukaryota | plants | species | 749593 | click here |
| escherichia coli | Yes | species | bacteria | bacteria | species | 562 | click here |
| fer-de-lance paramyxovirus | Yes | species | viruses and viroids | viruses | species | 122203 | click here |
| fusarium oxysporum | Yes | species | eukaryota | plants | species | 5507 | click here |
| fusarium solani | Yes | species | eukaryota | plants | species | 169388 | click here |
| fusarium sp. | Yes | species | eukaryota | plants | species | 29916 | click here |
| geotrichum candidum | Yes | species | | | species | 1173061 | click here |
| gnathostoma doloresi | Yes | species | eukaryota | invertebrates | species | 279402 | click here |
| gnathostoma nipponicum | Yes | species | eukaryota | invertebrates | species | 279403 | click here |
| hepatozoon musa | Yes | species | | | species | 1955306 | click here |
| hepatozoon sp. | Yes | species | | | species | 1484059 | click here |
| hepatozoon sp. ex rattlesnake br-2012 | Yes | no rank | | | species | 1306402 | click here |
| klebsiella oxytoca | Yes | species | bacteria | bacteria | species | 571 | click here |
| klebsiella pneumoniae | Yes | species | bacteria | bacteria | species | 573 | click here |
| kocuria palustris | Yes | species | bacteria | bacteria | species | 71999 | click here |
| mesocestoides corti | Yes | species | eukaryota | invertebrates | species | 53468 | click here |
| mesocestoides lineatus | Yes | species | eukaryota | invertebrates | species | 160008 | click here |
| metarhizium robertsii | Yes | species | eukaryota | plants | species | 568076 | click here |
| mexican black-tailed rattlesnake bornavirus | Yes | species | | | species | 2817571 | click here |
| micrococcus sp. | Yes | species | bacteria | bacteria | species | 1271 | click here |
| morganella morganii | Yes | species | bacteria | bacteria | species | 582 | click here |
| mycoplasma sp. | Yes | species | bacteria | bacteria | species | 2108 | click here |
| nectria sp. | Yes | species | | | species | 1755444 | click here |
| ophidiomyces ophiodiicola | Yes | species | | | species | 1387563 | click here |
| ophiotaenia grandis | Yes | species | eukaryota | invertebrates | species | 100445 | click here |
| ophiotaenia jarara | Yes | species | eukaryota | invertebrates | species | 100395 | click here |
| paenibacillus glucanolyticus | Yes | species | bacteria | bacteria | species | 59843 | click here |
| penicillium commune | Yes | species | eukaryota | plants | species | 36653 | click here |
| penicillium paxilli | Yes | species | eukaryota | plants | species | 70109 | click here |
| periconia sp. | Yes | species | | | species | 1756127 | click here |
| physaloptera praeputialis | Yes | species | | | species | | click here |
| porocephalus crotali | Yes | species | eukaryota | invertebrates | species | 7567 | click here |
| pseudomonas aeruginosa | Yes | species | bacteria | bacteria | species | 287 | click here |
| pseudomonas fulva | Yes | species | bacteria | bacteria | species | 47880 | click here |
| pseudomonas sp. | Yes | species | bacteria | bacteria | species | 306 | click here |
| purpureocillium lilacinum | Yes | species | eukaryota | plants | species | 33203 | click here |
| raillietiella orientalis | Yes | species | | | species | 1382697 | click here |
| renifer kansensis | Yes | species | eukaryota | invertebrates | species | 177590 | click here |
| reptile calicivirus | Yes | no rank | viruses and viroids | viruses | no rank | 47047 | click here |
| reptile vesivirus cro1 | Yes | no rank | | | no rank | 1266463 | click here |
| reptilian orthoreovirus | Yes | species | viruses and viroids | viruses | species | 226613 | click here |
| reptilian paramyxovirus | Yes | species | viruses and viroids | viruses | species | 156909 | click here |
| rhodotorula mucilaginosa | Yes | species | eukaryota | plants | species | 5537 | click here |
| salmonella enterica | Yes | species | bacteria | bacteria | species | 28901 | click here |
| salmonella enterica subsp. arizonae | Yes | subspecies | bacteria | bacteria | subspecies | 59203 | click here |
| salmonella enterica subsp. enterica serovar montevideo | Yes | no rank | bacteria | bacteria | no rank | 115981 | click here |
| sarcocystis sp. | Yes | species | eukaryota | invertebrates | species | 59669 | click here |
| schizangiella serpentis | Yes | species | eukaryota | plants | species | 181060 | click here |
| serpentine adeno-associated virus 2 | Yes | species | viruses and viroids | viruses | species | 575982 | click here |
| serpentirhabdias viperidicus | Yes | species | | | species | 1856858 | click here |
| serratia marcescens | Yes | species | bacteria | bacteria | species | 615 | click here |
| serratia sp. | Yes | species | bacteria | bacteria | species | 616 | click here |
| snake paramyxovirus | Yes | species | viruses and viroids | viruses | species | 659372 | click here |
| spirometra decipiens | Yes | species | eukaryota | invertebrates | species | 372153 | click here |
| spirometra sp. gga-2016 | Yes | no rank | | | species | 1889902 | click here |
| staphylococcus arlettae | Yes | species | bacteria | bacteria | species | 29378 | click here |
| staphylococcus aureus | Yes | species | bacteria | bacteria | species | 1280 | click here |
| staphylococcus sciuri | Yes | species | bacteria | bacteria | species | 1296 | click here |
| staphylococcus sp. | Yes | no rank | bacteria | bacteria | species | 29387 | click here |
| stenotrophomonas maltophilia | Yes | species | bacteria | bacteria | species | 40324 | click here |
| strongyloides mirzai | Yes | species | eukaryota | invertebrates | species | 553529 | click here |
| toxoplasma gondii | Yes | species | eukaryota | invertebrates | species | 5811 | click here |
| trichoderma atroviride | Yes | species | eukaryota | plants | species | 63577 | click here |
| trichoderma harzianum | Yes | species | eukaryota | plants | species | 5544 | click here |
| trypanosoma cascavelli | Yes | species | eukaryota | invertebrates | species | 480048 | click here |
| trypanosoma serpentis | Yes | species | | | species | 1562560 | click here |
| uncultured bacterium | Yes | no rank | bacteria | environmental samples | species | 77133 | click here |
| uncultured helicobacter sp. | Yes | no rank | bacteria | environmental samples | species | 175537 | click here |
| viperid adenovirus parias/hungary/2008 | Yes | no rank | viruses and viroids | viruses | no rank | 576945 | click here |
| west nile virus | Yes | species | viruses and viroids | viruses | species | 11082 | click here |
| yamadazyma phyllophila | Yes | species | | | species | 1207388 | click here |
| yokenella regensburgei | Yes | species | bacteria | bacteria | species | 158877 | click here |