| aeromonas salmonicida | No | species | bacteria | bacteria | species | 645 | click here |
| aeromonas salmonicida | Yes | species | bacteria | bacteria | species | 645 | click here |
| aeromonas salmonicida subsp. achromogenes | No | subspecies | bacteria | bacteria | subspecies | 113288 | click here |
| aeromonas salmonicida subsp. salmonicida | No | subspecies | bacteria | bacteria | subspecies | 29491 | click here |
| aeromonas sobria | Yes | species | bacteria | bacteria | species | 646 | click here |
| aeromonas sp. u351 | Yes | no rank | bacteria | bacteria | species | 351168 | click here |
| aeromonas sp. u360 | Yes | no rank | bacteria | bacteria | species | 349339 | click here |
| anisakis simplex | Yes | species | eukaryota | invertebrates | species | 6269 | click here |
| apatemon gracilis | No | species | eukaryota | invertebrates | species | 145298 | click here |
| budvicia aquatica | Yes | species | bacteria | bacteria | species | 82979 | click here |
| buttiauxella agrestis | Yes | species | bacteria | bacteria | species | 82977 | click here |
| candidatus clavichlamydia salmonicola | No | subspecies | bacteria | bacteria | species | 469812 | click here |
| candidatus piscichlamydia salmonis | No | subspecies | bacteria | bacteria | species | 263190 | click here |
| carnobacterium maltaromaticum | Yes | species | bacteria | bacteria | species | 2751 | click here |
| chryseobacterium sp. uof co294 | No | no rank | bacteria | bacteria | species | 252398 | click here |
| contracaecum rudolphii | Yes | species | eukaryota | invertebrates | species | 142972 | click here |
| crepidostomum farionis | No | species | | | species | 984080 | click here |
| crepidostomum metoecus | No | species | | | species | 984081 | click here |
| crepidostomum sp. 2 ak-2017 | No | no rank | | | species | 1972543 | click here |
| cryptobia borreli | No | species | | | species | | click here |
| cryptosporidium parvum | No | species | eukaryota | invertebrates | species | 5807 | click here |
| cryptosporidium sp. | No | species | eukaryota | invertebrates | species | 90962 | click here |
| cutthroat trout virus | No | no rank | | | no rank | 1016879 | click here |
| cyathocephalus truncatus | No | species | eukaryota | invertebrates | species | 70624 | click here |
| cystidicola farionis | No | species | eukaryota | invertebrates | species | 214005 | click here |
| dentitruncus truttae | No | species | | | species | 1233521 | click here |
| diphyllobothrium latum | No | species | eukaryota | invertebrates | species | 60516 | click here |
| diplostomum baeri | No | species | eukaryota | invertebrates | species | 183642 | click here |
| diplostomum baeri | Yes | species | eukaryota | invertebrates | species | 183642 | click here |
| diplostomum mergi | No | species | eukaryota | invertebrates | species | 183643 | click here |
| diplostomum mergi | Yes | species | eukaryota | invertebrates | species | 183643 | click here |
| diplostomum sp. lineage 3 ak-2017 | No | no rank | | | species | 1972544 | click here |
| diplostomum sp. lineage 5 ak-2017 | No | no rank | | | species | 1972546 | click here |
| discocotyle sagittata | No | species | eukaryota | invertebrates | species | 116847 | click here |
| echinorhynchus truttae | No | species | eukaryota | invertebrates | species | 185727 | click here |
| enterobacteriaceae bacterium u247 | Yes | no rank | bacteria | bacteria | species | 353196 | click here |
| enterobacteriaceae bacterium u248 | Yes | no rank | bacteria | bacteria | species | 353197 | click here |
| enterobacteriaceae bacterium u249 | Yes | no rank | bacteria | bacteria | species | 353198 | click here |
| enterobacteriaceae bacterium u251 | Yes | no rank | bacteria | bacteria | species | 353199 | click here |
| enterobacteriaceae bacterium u260 | Yes | no rank | bacteria | bacteria | species | 353200 | click here |
| enterobacteriaceae bacterium u280 | Yes | no rank | bacteria | bacteria | species | 353201 | click here |
| enterobacteriaceae bacterium u305 | Yes | no rank | bacteria | bacteria | species | 353202 | click here |
| enterobacteriaceae bacterium u310 | Yes | no rank | bacteria | bacteria | species | 353203 | click here |
| enterobacteriaceae bacterium u319 | Yes | no rank | bacteria | bacteria | species | 353204 | click here |
| erwinia persicina | Yes | species | bacteria | bacteria | species | 55211 | click here |
| escherichia coli | No | species | bacteria | bacteria | species | 562 | click here |
| eubothrium crassum | No | species | eukaryota | invertebrates | species | 70637 | click here |
| eustrongylides papillosus | No | species | | | species | | click here |
| flavobacterium columnare | No | species | bacteria | bacteria | species | 996 | click here |
| flavobacterium psychrophilum | No | species | bacteria | bacteria | species | 96345 | click here |
| flavobacterium psychrophilum | Yes | species | bacteria | bacteria | species | 96345 | click here |
| flavobacterium sp. | Yes | species | bacteria | bacteria | species | 239 | click here |
| gyrodactylus cf. teuchis | No | subspecies | eukaryota | invertebrates | species | 452117 | click here |
| gyrodactylus derjavini | No | species | eukaryota | invertebrates | species | 42440 | click here |
| gyrodactylus derjavinoides | No | species | eukaryota | invertebrates | species | 368976 | click here |
| gyrodactylus derjavinoides | Yes | species | eukaryota | invertebrates | species | 368976 | click here |
| gyrodactylus lotae | No | species | eukaryota | invertebrates | species | 147601 | click here |
| gyrodactylus teuchis | No | species | eukaryota | invertebrates | species | 103805 | click here |
| gyrodactylus truttae | No | species | eukaryota | invertebrates | species | 42441 | click here |
| gyrodactylus truttae | Yes | species | eukaryota | invertebrates | species | 42441 | click here |
| hafnia alvei | No | species | bacteria | bacteria | species | 569 | click here |
| hafnia alvei | Yes | species | bacteria | bacteria | species | 569 | click here |
| hysterothylacium aduncum | Yes | species | eukaryota | invertebrates | species | 118886 | click here |
| ichthyobodo necator | No | species | eukaryota | invertebrates | species | 155203 | click here |
| infectious hematopoietic necrosis virus | No | no rank | viruses and viroids | viruses | no rank | 11290 | click here |
| infectious pancreatic necrosis virus | No | species | viruses and viroids | viruses | species | 11002 | click here |
| infectious pancreatic necrosis virus | Yes | species | viruses and viroids | viruses | species | 11002 | click here |
| infectious pancreatic necrosis virus serotype a5 | No | no rank | viruses and viroids | viruses | no rank | 523766 | click here |
| infectious salmon anemia virus | No | species | viruses and viroids | viruses | species | 55987 | click here |
| iodobacter limnosediminis | No | no rank | bacteria | bacteria | species | 752139 | click here |
| lactococcus garvieae | No | species | bacteria | bacteria | species | 1363 | click here |
| lactococcus lactis | No | species | bacteria | bacteria | species | 1358 | click here |
| lactococcus lactis subsp. tructae | No | no rank | bacteria | bacteria | species | 542833 | click here |
| lake trout rhabdovirus 903/87 | No | no rank | viruses and viroids | viruses | no rank | 170618 | click here |
| leptolegnia sp. sr-2014 | No | no rank | | | species | 1503226 | click here |
| microsporidium sp. stf | Yes | no rank | eukaryota | plants | species | 208433 | click here |
| moellerella wisconsensis | Yes | species | bacteria | bacteria | species | 158849 | click here |
| myxidium truttae | No | species | eukaryota | invertebrates | species | 109796 | click here |
| myxobolus neurobius | No | species | eukaryota | invertebrates | species | 81496 | click here |
| myxobolus sp. ash-05 | No | no rank | eukaryota | invertebrates | species | 336059 | click here |
| naegleria pagei | Yes | species | eukaryota | invertebrates | species | 234920 | click here |
| neochlamydia sp. trut23-12-2015_venoge-embouchure | No | no rank | | | species | 1771895 | click here |
| nucleospora salmonis | No | species | eukaryota | plants | species | 54411 | click here |
| pantoea cedenensis | Yes | species | bacteria | bacteria | species | 92932 | click here |
| paranucleospora theridion | No | species | eukaryota | plants | species | 723276 | click here |
| phyllodistomum umblae | No | species | | | species | 1493518 | click here |
| pike fry-like rhabdovirus | No | species | viruses and viroids | viruses | species | 219585 | click here |
| piscine orthoreovirus 3 | No | species | | | species | 2153377 | click here |
| piscine reovirus | No | species | | | species | 1157337 | click here |
| piscine reovirus | Yes | species | | | species | 1157337 | click here |
| plesiomonas shigelloides | Yes | species | bacteria | bacteria | species | 703 | click here |
| pomphorhynchus laevis | No | species | eukaryota | invertebrates | species | 141832 | click here |
| pomphorhynchus tereticollis | No | species | eukaryota | invertebrates | species | 255491 | click here |
| pseudomonas sp. u347 | Yes | no rank | bacteria | bacteria | species | 349334 | click here |
| pseudomonas sp. u359 | Yes | no rank | bacteria | bacteria | species | 349333 | click here |
| rahnella aquatilis | Yes | species | bacteria | bacteria | species | 34038 | click here |
| rahnella sp. u243 | Yes | no rank | bacteria | bacteria | species | 349341 | click here |
| rahnella sp. u245 | Yes | no rank | bacteria | bacteria | species | 349335 | click here |
| rahnella sp. u250 | Yes | no rank | bacteria | bacteria | species | 349336 | click here |
| rahnella sp. u253 | Yes | no rank | bacteria | bacteria | species | 353193 | click here |