| ceratonova shasta | No | species | eukaryota | invertebrates | species | 60662 | click here |
| cryptobia borreli | No | species | | | species | | click here |
| diphyllobothrium dendriticum | No | species | eukaryota | invertebrates | species | 28845 | click here |
| flavobacterium columnare | No | species | bacteria | bacteria | species | 996 | click here |
| flavobacterium psychrophilum | No | species | bacteria | bacteria | species | 96345 | click here |
| flavobacterium psychrophilum fpg3 | No | no rank | | | no rank | 1452724 | click here |
| flavobacterium sp. cs29 | No | no rank | bacteria | bacteria | species | 582541 | click here |
| flavobacterium sp. cs30 | No | no rank | bacteria | bacteria | species | 582542 | click here |
| flavobacterium sp. cs31 | No | no rank | bacteria | bacteria | species | 582543 | click here |
| flavobacterium sp. cs34 | No | no rank | bacteria | bacteria | species | 582544 | click here |
| flavobacterium sp. cs35 | No | no rank | bacteria | bacteria | species | 582545 | click here |
| flavobacterium sp. cs36 | No | no rank | bacteria | bacteria | species | 582546 | click here |
| flavobacterium sp. cs37 | No | no rank | bacteria | bacteria | species | 582547 | click here |
| flavobacterium sp. cs38 | No | no rank | bacteria | bacteria | species | 582548 | click here |
| flavobacterium sp. cs40 | No | no rank | bacteria | bacteria | species | 582549 | click here |
| flavobacterium sp. cs41 | No | no rank | bacteria | bacteria | species | 582550 | click here |
| flavobacterium sp. cs42 | No | no rank | bacteria | bacteria | species | 582551 | click here |
| flavobacterium sp. cs43 | No | no rank | bacteria | bacteria | species | 582552 | click here |
| infectious pancreatic necrosis virus | No | species | viruses and viroids | viruses | species | 11002 | click here |
| infectious salmon anemia virus | No | species | viruses and viroids | viruses | species | 55987 | click here |
| loma salmonae | No | species | eukaryota | plants | species | 54566 | click here |
| mycobacterium salmoniphilum | No | species | bacteria | bacteria | species | 404941 | click here |
| myxidium truttae | No | species | eukaryota | invertebrates | species | 109796 | click here |
| myxobolus fryeri | No | species | eukaryota | invertebrates | species | 507705 | click here |
| myxobolus insidiosus | No | species | eukaryota | invertebrates | species | 59784 | click here |
| myxobolus kisutchi | No | species | eukaryota | invertebrates | species | 452913 | click here |
| myxobolus squamalis | No | species | eukaryota | invertebrates | species | 59785 | click here |
| myxosporea sp. waukwaas river | No | no rank | eukaryota | invertebrates | species | 269169 | click here |
| nanophyetus salmincola | No | species | eukaryota | invertebrates | species | 240278 | click here |
| neoparamoeba perurans | No | species | eukaryota | invertebrates | species | 437603 | click here |
| paramoeba pemaquidensis | No | species | eukaryota | invertebrates | species | 180228 | click here |
| piscine orthoreovirus 2 | No | species | | | species | 1828353 | click here |
| piscine orthoreovirus 3 | No | species | | | species | 2153377 | click here |
| piscine reovirus | No | species | | | species | 1157337 | click here |
| piscirickettsia salmonis | No | species | bacteria | bacteria | species | 1238 | click here |
| piscirickettsia salmonis lf-89 = atcc vr-1361 | No | no rank | | | no rank | 1227812 | click here |
| renibacterium salmoninarum | No | species | bacteria | bacteria | species | 1646 | click here |
| saprolegnia diclina | No | species | eukaryota | plants | species | 112098 | click here |
| saprolegnia parasitica | No | species | eukaryota | plants | species | 101203 | click here |
| shewanella baltica | No | species | bacteria | bacteria | species | 62322 | click here |
| tenacibaculum maritimum | No | species | bacteria | bacteria | species | 107401 | click here |
| tenacibaculum sp. | No | species | | | species | 1906242 | click here |
| tenacibaculum sp. tno020 | No | no rank | | | species | 1458515 | click here |
| tetracapsuloides bryosalmonae | No | species | eukaryota | invertebrates | species | 271932 | click here |
| uncultured bacterium | No | no rank | bacteria | environmental samples | species | 77133 | click here |
| uncultured exiguobacterium sp. | No | no rank | bacteria | environmental samples | species | 202669 | click here |
| uncultured flavobacteriia bacterium | No | no rank | bacteria | environmental samples | species | 212695 | click here |
| uncultured flavobacterium sp. | No | no rank | bacteria | environmental samples | species | 165435 | click here |
| uncultured piscirickettsia sp. | No | no rank | bacteria | environmental samples | species | 191465 | click here |
| uncultured pseudomonas sp. | No | no rank | bacteria | environmental samples | species | 114707 | click here |
| vibrio anguillarum | No | species | bacteria | bacteria | species | 55601 | click here |
| vibrio anguillarum 775 | No | no rank | bacteria | bacteria | no rank | 882102 | click here |
| vibrio ordalii | No | species | bacteria | bacteria | species | 28174 | click here |
| vibrio ordalii atcc 33509 | No | no rank | bacteria | bacteria | no rank | 990998 | click here |
| viral hemorrhagic septicemia virus | No | no rank | viruses and viroids | viruses | no rank | 11287 | click here |