| acetobacter lambici | No | species | | | species | 1332824 | click here |
| acetobacter tropicalis | Yes | species | bacteria | bacteria | species | 104102 | click here |
| agrobacterium rhizogenes | Yes | species | bacteria | bacteria | species | 359 | click here |
| agrobacterium sp. 13-626 | Yes | no rank | | | species | 1841652 | click here |
| agrobacterium tumefaciens | Yes | species | bacteria | bacteria | species | 358 | click here |
| alternaria aff. arborescens jhcw-2014 | No | no rank | | | species | 1579477 | click here |
| alternaria aff. arborescens jhcw-2014 | Yes | no rank | | | species | 1579477 | click here |
| alternaria alternata | No | species | eukaryota | plants | species | 5599 | click here |
| alternaria alternata | Yes | species | eukaryota | plants | species | 5599 | click here |
| alternaria arborescens | Yes | species | eukaryota | plants | species | 156630 | click here |
| alternaria arbusti | No | species | eukaryota | plants | species | 232088 | click here |
| alternaria arbusti | Yes | species | eukaryota | plants | species | 232088 | click here |
| alternaria botrytis | Yes | species | eukaryota | plants | species | 119956 | click here |
| alternaria calycipyricola | Yes | species | | | species | 1187907 | click here |
| alternaria destruens | Yes | species | eukaryota | plants | species | 230003 | click here |
| alternaria gaisen | Yes | species | eukaryota | plants | species | 167740 | click here |
| alternaria rosae | Yes | species | | | species | 1187941 | click here |
| alternaria sp. | No | species | | | species | 1715220 | click here |
| alternaria sp. | Yes | species | | | species | 1715220 | click here |
| alternaria sp. gxglb-1 | Yes | no rank | | | species | 1761473 | click here |
| alternaria sp. lhb1 | Yes | no rank | | | species | 1424340 | click here |
| alternaria tenuissima | Yes | species | eukaryota | plants | species | 119927 | click here |
| alternaria ventricosa | Yes | species | | | species | 1187951 | click here |
| alternaria yaliinficiens | Yes | species | | | species | 984488 | click here |
| ampelomyces sp. bpi 879141 | Yes | no rank | eukaryota | plants | species | 742417 | click here |
| aphis gossypii | Yes | species | eukaryota | invertebrates | species | 80765 | click here |
| aphis pomi | No | species | eukaryota | invertebrates | species | 527582 | click here |
| apple chlorotic leaf spot virus | Yes | species | viruses and viroids | viruses | species | 12175 | click here |
| apple dimple fruit viroid | Yes | species | viruses and viroids | viruses | species | 73494 | click here |
| apple green crinkle associated virus | Yes | species | | | species | 1211388 | click here |
| apple mosaic virus | Yes | species | viruses and viroids | viruses | species | 12319 | click here |
| apple rubbery wood virus 1 | No | no rank | | | no rank | 2164102 | click here |
| apple rubbery wood virus 2 | Yes | no rank | | | no rank | 2164103 | click here |
| apple scar skin viroid | Yes | species | viruses and viroids | viruses | species | 12895 | click here |
| apple stem grooving virus | Yes | species | viruses and viroids | viruses | species | 28347 | click here |
| apple stem pitting virus | Yes | species | viruses and viroids | viruses | species | 35350 | click here |
| armillaria gallica | No | species | eukaryota | plants | species | 47427 | click here |
| armillaria mellea | No | species | eukaryota | plants | species | 47429 | click here |
| aster yellows phytoplasma | Yes | subspecies | bacteria | bacteria | species | 35779 | click here |
| athelia bombacina | Yes | species | eukaryota | plants | species | 5310 | click here |
| aureobasidium pullulans | Yes | species | eukaryota | plants | species | 5580 | click here |
| bacillus amyloliquefaciens | Yes | species | bacteria | bacteria | species | 1390 | click here |
| biscogniauxia rosacearum | Yes | species | | | species | 1765962 | click here |
| botryosphaeria berengeriana f. sp. pyricola | Yes | no rank | eukaryota | plants | no rank | 760146 | click here |
| botryosphaeria dothidea | No | species | eukaryota | plants | species | 55169 | click here |
| botryosphaeria dothidea | Yes | species | eukaryota | plants | species | 55169 | click here |
| botryosphaeria sp. gs-2014 | Yes | no rank | | | species | 1480134 | click here |
| botrytis cinerea | Yes | species | eukaryota | plants | species | 40559 | click here |
| botrytis prunorum | No | species | | | species | 1641147 | click here |
| buckleyzyma aurantiaca | Yes | species | eukaryota | plants | species | 91979 | click here |
| candidatus phytoplasma mali | Yes | subspecies | bacteria | bacteria | species | 37692 | click here |
| candidatus phytoplasma prunorum | Yes | subspecies | bacteria | bacteria | species | 47565 | click here |
| candidatus phytoplasma pyri | No | subspecies | bacteria | bacteria | species | 47566 | click here |
| candidatus phytoplasma pyri | Yes | subspecies | bacteria | bacteria | species | 47566 | click here |
| carposina sasakii | No | species | eukaryota | invertebrates | species | 252295 | click here |
| carposina sasakii | Yes | species | eukaryota | invertebrates | species | 252295 | click here |
| cauliflower mosaic virus | Yes | species | viruses and viroids | viruses | species | 10641 | click here |
| cephaleuros parasiticus | Yes | species | eukaryota | plants | species | 173370 | click here |
| cherry virus turkey | Yes | species | | | species | 2506409 | click here |
| citrus concave gum-associated virus | Yes | no rank | | | no rank | 2024604 | click here |
| citrus virus a | Yes | species | | | species | 2484986 | click here |
| cladosporium sp. cpc 15516 | Yes | no rank | eukaryota | plants | species | 706149 | click here |
| claroideoglomus lamellosum | Yes | species | eukaryota | plants | species | 118615 | click here |
| claroideoglomus sp. | Yes | species | | | species | 1913634 | click here |
| coccus hesperidum | Yes | species | eukaryota | invertebrates | species | 538890 | click here |
| colletotrichum acutatum | Yes | species | eukaryota | plants | species | 27357 | click here |
| colletotrichum aenigma | No | species | | | species | 1215731 | click here |
| colletotrichum aenigma | Yes | species | | | species | 1215731 | click here |
| colletotrichum citricola | Yes | species | | | species | 1365443 | click here |
| colletotrichum conoides | Yes | species | | | species | 1789212 | click here |
| colletotrichum fioriniae | No | species | eukaryota | plants | species | 710243 | click here |
| colletotrichum fioriniae | Yes | species | eukaryota | plants | species | 710243 | click here |
| colletotrichum fructicola | No | species | eukaryota | plants | species | 690256 | click here |
| colletotrichum fructicola | Yes | species | eukaryota | plants | species | 690256 | click here |
| colletotrichum gloeosporioides | Yes | species | eukaryota | plants | species | 474922 | click here |
| colletotrichum godetiae | No | species | | | species | 1209918 | click here |
| colletotrichum karstii | Yes | species | | | species | 1095194 | click here |
| colletotrichum salicis | Yes | species | eukaryota | plants | species | 1209931 | click here |
| colletotrichum siamense | Yes | species | eukaryota | plants | species | 690259 | click here |
| colletotrichum sp. pf0809 | No | no rank | eukaryota | plants | species | 584631 | click here |
| crisicoccus seruratus | Yes | species | eukaryota | invertebrates | species | 658168 | click here |
| cucumber mosaic virus | No | species | viruses and viroids | viruses | species | 12305 | click here |
| cucumber mosaic virus | Yes | species | viruses and viroids | viruses | species | 12305 | click here |
| cylindrocarpon sp. ac-2011a | No | no rank | | | species | 1079260 | click here |
| cylindrocarpon sp. cpc 13545 | No | no rank | | | species | 1079261 | click here |
| cyphellophora sessilis | Yes | species | eukaryota | plants | species | 293231 | click here |
| cystofilobasidium capitatum | Yes | species | eukaryota | plants | species | 5412 | click here |
| cytospora ceratosperma | Yes | species | | | species | 1928361 | click here |
| cytospora donetzica | Yes | species | | | species | 1954261 | click here |
| cytospora leucostoma | Yes | species | eukaryota | plants | species | 1230097 | click here |
| cytospora parakantschavelii | Yes | species | | | species | 1954265 | click here |
| cytospora sacculus | Yes | species | eukaryota | plants | species | 252746 | click here |
| cytospora sp. | Yes | species | | | species | 1715226 | click here |
| diaporthe ambigua | Yes | species | eukaryota | plants | species | 73123 | click here |
| diaporthe brasiliensis | Yes | species | | | species | 1304153 | click here |
| diaporthe cf. nobilis rg-2013 | Yes | no rank | | | species | 1303588 | click here |
| diaporthe citrichinensis | Yes | species | | | species | 1365816 | click here |
| diaporthe eres | No | species | eukaryota | plants | species | 83184 | click here |
| diaporthe eres | Yes | species | eukaryota | plants | species | 83184 | click here |
| diaporthe foeniculacea | Yes | species | | | species | 1303504 | click here |