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human, food and animal campylobacter spp. isolated in portugal: high genetic diversity and antibiotic resistance rates.infections by campylobacter jejuni and campylobacter coli are considered the major cause of bacterial gastroenteritis in humans, with food being the main source of infection. in this study, a total of 196 campylobacter strains (125 isolates from humans, 39 from retail food and 32 from food animal sources) isolated in portugal between 2009 and 2012 were characterised by multilocus sequence typing (mlst) and flaa short variable region (svr) typing. susceptibility to six antibiotics as well as the ...201425130097
a pre-enrichment step is essential for detection of campylobacter sp. in turbid pond water.this work aimed to detect campylobacter species from naturally contaminated turbid pond water by pcr. a total of 16 water samples were collected from a turbid village pond. four methods of dna extraction were applied to centrifuge pellets from eight 100 ml pond water samples prior to attempted detection of campylobacter by pcr without an enrichment step. these methods were (1) tris-hcl and sodium dodecyl sulfate followed by phenol:chloroform:isoamylalcohol extraction followed by treatment with d ...201425134901
a quantitative prioritisation of human and domestic animal pathogens in europe.disease or pathogen risk prioritisations aid understanding of infectious agent impact within surveillance or mitigation and biosecurity work, but take significant development. previous work has shown the h-(hirsch-)index as an alternative proxy. we present a weighted risk analysis describing infectious pathogen impact for human health (human pathogens) and well-being (domestic animal pathogens) using an objective, evidence-based, repeatable approach; the h-index. this study established the highe ...201425136810
experimental study of the impact of antimicrobial treatments on campylobacter, enterococcus and pcr-capillary electrophoresis single-strand conformation polymorphism profiles of the gut microbiota of chickens.an experiment was conducted to compare the impact of antimicrobial treatments on the susceptibility of campylobacter, enterococcus faecium and enterococcus faecalis, and on the diversity of broiler microbiota. specific-pathogen-free chickens were first orally inoculated with strains of campylobacter and enterococcus faecium. birds were then orally treated with recommended doses of oxytetracycline, sulfadimethoxine/trimethoprim, amoxicillin or enrofloxacin. faecal samples were collected before, d ...201425142966
investigating the host specificity of campylobacter jejuni and campylobacter coli by sequencing gyrase subunit a.surveillance and field investigations of campylobacter infections require molecular tools with genetic markers appropriate for tracing purposes, i.e. based on the principle that some campylobacter lineages acquire a host signature under adaptive selection pressure. we developed a sequence-based method targeting the quinolone resistance determining region within the subunit a of dna gyrase (gyra). host specificity was evaluated by characterizing two collections of campylobacter jejuni (n = 430) a ...201425163418
identification and characterisation of new campylobacter group iii phages of animal origin.campylobacter-specific bacteriophages (phages) are considered as an alternative intervention strategy to decrease the level of poultry contamination with campylobacter, a leading cause of gastroenteritis worldwide. eradication efficiency depends primarily on phage-host interaction mediated by phage tail-spike proteins and bacterial receptors. here, this interaction was characterised using tail-spike gene sequence analysis, phage neutralisation by antiserum and host range analysis of newly isolat ...201425168177
prevalence of thermotolerant campylobacter spp. in farmed hares (lepus europaeus).thermotolerant campylobacter spp. were isolated from 118/240 (49.2%) rectal swabs from commercially farmed hares (lepus europaeus) in southern italy. using multiplex pcr, campylobacter coli was identified in 118/118 (100%) positive samples, while 17/118 (14.4%) positive samples were also positive for campylobacter jejuni. adult hares had a higher prevalence of infection with campylobacter spp. than juvenile hares.201425168717
campylobacter colonization and proliferation in the broiler chicken upon natural field challenge is not affected by the bird growth rate or breed.the zoonotic association between campylobacter bacteria in poultry and humans has been characterized by decades of research which has attempted to elucidate the epidemiology of this complex relationship and to reduce carriage within poultry. while much work has focused on the mechanisms facilitating its success in contaminating chicken flocks (and other animal hosts), it remains difficult to consistently exclude campylobacter under field conditions. within the united kingdom poultry industry, va ...201425172857
isolation of campylobacter from brazilian broiler flocks using different culturing procedures.conventional culturing methods enable the detection of campylobacter in broiler flocks. however, laboratory culture of campylobacter is laborious because of its fastidious behavior and the presence of competing nontarget bacteria. this study evaluated different protocols to isolate campylobacter from broiler litter, feces, and cloacal and drag swabs. samples taken from commercial brazilian broiler flocks were directly streaked onto preston agar (pa), campy-line agar (cla), and modified charcoal ...201425172927
the sweet tooth of bacteria: common themes in bacterial glycoconjugates.humans have been increasingly recognized as being superorganisms, living in close contact with a microbiota on all their mucosal surfaces. however, most studies on the human microbiota have focused on gaining comprehensive insights into the composition of the microbiota under different health conditions (e.g., enterotypes), while there is also a need for detailed knowledge of the different molecules that mediate interactions with the host. glycoconjugates are an interesting class of molecules fo ...201425184559
phenotypic and genotypic diversity of thermophilic campylobacter spp. in commercial turkey flocks: a longitudinal study.poultry are recognized as a main reservoir of campylobacter spp. however, longitudinal studies investigating the persistence of campylobacter on commercial meat turkeys are rare. the objectives of this study were to determine the prevalence, antimicrobial susceptibility, and persistence of genotypically related strains of campylobacter spp. recovered from three commercial turkey farms in ohio belonging to a single producer. eight hundred ten samples were collected from birds aged 1 week to slaug ...201425184688
evolution and comparative genomics of campylobacter jejuni st-677 clonal complex.campylobacter is the most common bacterial cause of gastroenteritis in the european union with over 200,000 laboratory-confirmed cases reported annually. this is the first study to describe findings related to comparative genomics analyses of the sequence type (st)-677 clonal complex (cc), a campylobacter jejuni lineage associated with bacteremia cases in humans. we performed whole-genome sequencing, using illumina hiseq sequencing technology, on five related st-677 cc isolates from two chicken ...201425193305
genomic evidence for the emergence and evolution of pathogenicity and niche preferences in the genus campylobacter.the genus campylobacter includes some of the most relevant pathogens for human and animal health; the continuous effort in their characterization has also revealed new species putatively involved in different kind of infections. nowadays, the available genomic data for the genus comprise a wide variety of species with different pathogenic potential and niche preferences. in this work, we contribute to enlarge this available information presenting the first genome for the species campylobacter sp ...201425193310
accurate detection of campylobacter spp. antigens by immunochromatography and enzyme immunoassay in routine microbiological laboratory.campylobacter spp. are fastidious microorganisms, and their detection by culture depends on the freshness of the stool sample and the skills of the laboratory staff. to improve laboratory diagnosis, assays for the detection of specific antigens have been developed. here, we evaluated two assays for the detection of campylobacter spp.-specific antigens, i.e., one immunochromatographic test and one enzyme-linked immunosorbent assay (eia), in 38 frozen campylobacter spp.-positive specimens and pros ...201425215191
susceptibility to campylobacter infection is associated with the species composition of the human fecal microbiota.the gut microbiota is essential for human health, but very little is known about how the composition of this ecosystem can influence and respond to bacterial infections. here we address this by prospectively studying the gut microbiota composition before, during, and after natural campylobacter infection in exposed poultry abattoir workers. the gut microbiota composition was analyzed with 16s amplicon sequencing of fecal samples from poultry abattoir workers during the peak season of campylobact ...201425227462
multilocus sequence typing (mlst) and whole-genome mlst of campylobacter jejuni isolates from human infections in three districts during a seasonal peak in finland.a total of 95 human campylobacter jejuni isolates acquired from domestic infections and collected from three districts in finland during the seasonal peak (june to september) in 2012 were analyzed by pcr-based multilocus sequence typing (mlst) and by whole-genome sequencing (wgs). four predominant sequence types (sts) were detected among the isolates: st-45 (21%) and st-230 (14%, st-45 clonal complex [cc]), st-267 (21%, st-283 cc), and st-677 (19%, st-677 cc). in districts 1 and 3, most of the i ...201425232158
sensitive and rapid detection of campylobacter species from stools of children with diarrhea in japan by the loop-mediated isothermal amplification method.we detected campylobacter spp. in 5% (20/380) of diarrheal stool samples collected at an outpatient clinic in kyoto using a commercial loop-mediated isothermal amplification (lamp) kit with a fluorescent detection reagent after dna extraction. the sensitivity and specificity were 100% in comparison with those of semi-nested pcr for the differentiation of campylobacter jejuni and campylobacter coli. fourteen of the 20 samples were already determined as c. jejuni by the culture method. all 20 samp ...201425241688
antimicrobial susceptibility profiles and molecular typing of campylobacter jejuni and campylobacter coli isolates from ducks in south korea.campylobacter is a food-borne zoonotic pathogen that causes human gastroenteritis worldwide. campylobacter bacteria are commensal in the intestines of many food production animals, including ducks and chickens. the objective of the study was to determine the prevalence of campylobacter species in domestic ducks, and the agar dilution method was used to determine resistance of the isolates to eight antibiotics. in addition, multilocus sequence typing (mlst) was performed to determine the sequence ...201425261524
incidence of and factors associated with false positives in laboratory diagnosis of norovirus infection by amplification of the rna-dependent rna polymerase gene.conventional reverse transcription-polymerase chain reaction (rt-pcr) amplification of the rna-dependent rna polymerase (rdrp) gene remains a used method for the rapid detection of norovirus (nv) in clinical laboratories. the incidence of and factors associated with false positives in this assay have not been previously evaluated.201425264621
emerging technologies for the clinical microbiology laboratory.in this review we examine the literature related to emerging technologies that will help to reshape the clinical microbiology laboratory. these topics include nucleic acid amplification tests such as isothermal and point-of-care molecular diagnostics, multiplexed panels for syndromic diagnosis, digital pcr, next-generation sequencing, and automation of molecular tests. we also review matrix-assisted laser desorption ionization-time of flight (maldi-tof) and electrospray ionization (esi) mass spe ...201425278575
method-dependent variability in determination of prevalence of campylobacter jejuni and campylobacter coli in canadian retail poultry.campylobacter is the most frequent cause of bacterial gastroenteritis in canada, and the illness is commonly associated with poultry consumption. whereas canadian retail poultry is often contaminated with campylobacters, studies on the prevalence of this organism are inconsistent due to variability in sampling and microbiological methodology. to determine the current microbiological status of canadian poultry, and to evaluate two commonly used microbiological methods, 348 raw poultry samples wer ...201425285484
interaction between campylobacter and intestinal epithelial cells leads to a different proinflammatory response in human and porcine host.campylobacter jejuni and campylobacter coli are recognized as the leading causes of human diarrheal disease throughout the development world. unlike human beings, gastrointestinal tract of pigs are frequently colonized by campylobacter to a high level in a commensal manner. the aim of this study was to identify the differences underlying the divergent outcome following campylobacter challenge in porcine versus human host. in order to address this, a comparative in vitro infection model was combi ...201425307769
metabolomic profiling and antioxidant activity of some acacia species.metabolomic profiling of different parts (leaves, flowers and pods) of acacia species (acacia nilotica, acacia seyal and acacia laeta) was evaluated. the multivariate data analyses such as principal component analysis (pca) and partial least square-discriminant analysis (pls-da) were used to differentiate the distribution of plant metabolites among different species or different organs of the same species. a. nilotica was characterized with a high content of saponins and a. seyal was characteriz ...201425313274
detection of zoonotic pathogens and characterization of novel viruses carried by commensal rattus norvegicus in new york city.norway rats (rattus norvegicus) are globally distributed and concentrate in urban environments, where they live and feed in closer proximity to human populations than most other mammals. despite the potential role of rats as reservoirs of zoonotic diseases, the microbial diversity present in urban rat populations remains unexplored. in this study, we used targeted molecular assays to detect known bacterial, viral, and protozoan human pathogens and unbiased high-throughput sequencing to identify ...201425316698
paidb v2.0: exploration and analysis of pathogenicity and resistance islands.pathogenicity is a complex multifactorial process confounded by the concerted activity of genetic regions associated with virulence and/or resistance determinants. pathogenicity islands (pais) and resistance islands (reis) are key to the evolution of pathogens and appear to play complimentary roles in the process of bacterial infection. while pais promote disease development, reis give a fitness advantage to the host against multiple antimicrobial agents. the pathogenicity island database (paidb ...201425336619
paidb v2.0: exploration and analysis of pathogenicity and resistance islands.pathogenicity is a complex multifactorial process confounded by the concerted activity of genetic regions associated with virulence and/or resistance determinants. pathogenicity islands (pais) and resistance islands (reis) are key to the evolution of pathogens and appear to play complimentary roles in the process of bacterial infection. while pais promote disease development, reis give a fitness advantage to the host against multiple antimicrobial agents. the pathogenicity island database (paidb ...201425336619
emerging rapid resistance testing methods for clinical microbiology laboratories and their potential impact on patient management.atypical and multidrug resistance, especially esbl and carbapenemase expressing enterobacteriaceae, is globally spreading. therefore, it becomes increasingly difficult to achieve therapeutic success by calculated antibiotic therapy. consequently, rapid antibiotic resistance testing is essential. various molecular and mass spectrometry-based approaches have been introduced in diagnostic microbiology to speed up the providing of reliable resistance data. pcr- and sequencing-based approaches are th ...201425343142
differences in carbon source utilisation distinguish campylobacter jejuni from campylobacter coli.campylobacter jejuni and c. coli are human intestinal pathogens that are the most frequent causes of bacterial foodborne gastroenteritis in humans in the uk. in this study, we aimed to characterise the metabolic diversity of both c. jejuni and c. coli using a diverse panel of clinical strains isolated from the uk, pakistan and thailand, thereby representing both the developed and developing world. our aim was to apply multi genome analysis and biolog phenotyping to determine differences in carbo ...201425348335
a receptor-binding protein of campylobacter jejuni bacteriophage nctc 12673 recognizes flagellin glycosylated with acetamidino-modified pseudaminic acid.bacteriophage receptor-binding proteins (rbps) confer host specificity. we previously identified a putative rbp (gp047) from the campylobacter lytic phage nctc 12673 and demonstrated that gp047 has a broader host range than its parent phage. while nctc 12673 recognizes the capsular polysaccharide (cps) of a limited number of campylobacter jejuni isolates, gp047 binds to a majority of c. jejuni and related campylobacter coli strains. in this study, we demonstrate that gp047 also binds to acapsula ...201525354466
a severe case of persistent diarrhoea associated with arcobacter cryaerophilus but attributed to campylobacter sp. and a review of the clinical incidence of arcobacter spp.although rarely, arcobacter spp. have been associated with diarrhoea and bacteraemia. we report a persistent case in a healthy 26-year-old spanish male of bloody diarrhoea, which was attributed to campylobacter but in fact was caused by arcobacter cryaerophilus, as determined by sequencing of the rpob gene. the isolate was re-identified by matrix-assisted laser desorption ionization time of flight (maldi-tof) and genotyped for five putative virulence genes and for seven genes included in the arc ...201425356338
prevalence of salmonella and campylobacter on broiler chickens from farm to slaughter and efficiency of methods to remove visible fecal contamination.a study was conducted to investigate the prevalence of salmonella and campylobacter from farm to slaughter. the efficiency of trimming and water spray (490 to 588 kpa pressure) on the removal of visible fecal contamination from broiler carcasses before chilling was also investigated. drag swabs were used to sample litter from the farm houses. samples of ceca and carcasses without and with visible fecal contamination before and after trimming or spray washing of fecal contamination were taken dur ...201425364917
comparative genomics of the campylobacter lari group.the campylobacter lari group is a phylogenetic clade within the epsilon subdivision of the proteobacteria and is part of the thermotolerant campylobacter spp., a division within the genus that includes the human pathogen campylobacter jejuni. the c. lari group is currently composed of five species (c. lari, campylobacter insulaenigrae, campylobacter volucris, campylobacter subantarcticus, and campylobacter peloridis), as well as a group of strains termed the urease-positive thermophilic campylob ...201425381664
multilocus sequence typing of campylobacter jejuni and campylobacter coli from humans and chickens in north-eastern italy.this paper reports the multilocus sequence typing (mlst) of 57 c. jejuni and c. coli isolates from humans and chickens in italy and the identification of 17 new sequence types (sts). a high genetic diversity was detected among c. jejuni/c. coli and human/chicken isolates, with a predominance of clonal complexes cc21 and cc828. although human sts were not the same as those found in chickens, 3 ccs overlapped between human and chicken isolates. genotyping of campylobacter strains by mlst should be ...201425387294
characterization of campylobacter jejuni and campylobacter coli genotypes in poultry flocks by restriction fragment length polymorphism (rflp) analysis.we describe a simple, rapid, and discriminatory methodology that allows the routine molecular characterization of campylobacter jejuni and campylobacter coli isolates. the proposed approach is built on one of the earliest and simplest molecular typing methods ever, consisting on the analysis of the fragments of different lengths generated by digestion of homologous dna sequences with specific restriction endonucleases, a process known as restriction fragment length polymorphism (rflp) analysis. ...201525399105
intraspecies comparison of streptomyces pratensis genomes reveals high levels of recombination and gene conservation between strains of disparate geographic origin.streptomyces are widespread bacteria that contribute to the terrestrial carbon cycle and produce the majority of clinically useful antibiotics. while interspecific genomic diversity has been investigated among streptomyces, information is lacking on intraspecific genomic diversity. streptomyces pratensis has high rates of homologous recombination but the impact of such gene exchange on genome evolution and the evolution of natural product gene clusters remains uncharacterized.201425399205
prevalence and antimicrobial susceptibility of campylobacter spp. in oklahoma conventional and organic retail poultry.campylobacter is one of the most important foodborne pathogens that cause bacterial gastroenteritis.this study was conducted to investigate the prevalence and antimicrobial resistance of campylobacter in conventional and organic retail poultry samples purchased from grocery stores in tulsa, oklahoma.one hundred and fifty six chilled retail chicken samples (85 conventional and 71 organic) and 65 chilled retail conventional turkey samples were collected in this study. the prevalence of campylobact ...201425408778
first case report of fatal sepsis due to campylobacter upsaliensis.we encountered a rare case of severe fatal infection in a 70-year-old woman due to campylobacter upsaliensis, identified by pcr amplification and sequencing analysis of the 16s rrna gene using dna extracted from the isolates. to our knowledge, fatal sepsis due to this organism has never been described to date.201425411172
first case report of fatal sepsis due to campylobacter upsaliensis.we encountered a rare case of severe fatal infection in a 70-year-old woman due to campylobacter upsaliensis, identified by pcr amplification and sequencing analysis of the 16s rrna gene using dna extracted from the isolates. to our knowledge, fatal sepsis due to this organism has never been described to date.201425411172
systematic review and meta-analysis of the proportion of campylobacter cases that develop chronic sequelae.understanding of chronic sequelae development after campylobacter infection is limited. the objective of the study was to determine via systematic review and meta-analysis the proportion of campylobacter cases that develop chronic sequelae.201425416162
exploring pfge for detecting large plasmids in campylobacter jejuni and campylobacter coli isolated from various retail meats.campylobacter spp. is one of the most prevalent bacterial pathogens in retail meat, particularly poultry, and is a leading cause of diarrhea in humans. studies related to campylobacter large plasmids are limited in the literature possibly due to difficulty in isolating them using available alkaline lysis methods. the objectives of this study were to determine the prevalence of plasmids, particularly large ones, in campylobacter spp. isolated from various oklahoma retail meats, and to explore pfg ...201425436507
effect of administration route and dose escalation on plasma and intestinal concentrations of enrofloxacin and ciprofloxacin in broiler chickens.the (mis)use of fluoroquinolones in the fowl industry has led to an alarming incidence of fluoroquinolone resistance in pathogenic as well as commensal bacteria. next to simply reducing antimicrobial consumption, optimizing dosage regimens can be regarded as a suitable strategy to reduce antimicrobial resistance development without jeopardizing therapy efficacy and outcome. a first step in order to limit antimicrobial resistance is to assess the exposure of the intestinal microbiota to enrofloxa ...201425440469
prevalence, virulence, and antimicrobial resistance of campylobacter jejuni and campylobacter coli in white stork ciconia ciconia in poland.the aim of this study was to investigate the role of white stork ciconia ciconia as a potential reservoir of campylobacter spp. antimicrobial resistance and the presence of putative virulence genes of the isolates were also examined. a total of 398 white stork chicks sampled in western poland in habitats with high density of breeding were examined. rectal swabs were collected during breeding season 2009-2012 from storks developing in a relatively pure environment (odra meadows), in polluted area ...201525456607
comparison of anti-campylobacter activity of free thymol and thymol-β-d-glucopyranoside in absence or presence of β-glycoside-hydrolysing gut bacteria.thymol is a natural product that exhibits antimicrobial activity in vitro but in vivo results indicate that absorption within the proximal alimentary tract precludes its delivery to the distal gut. presently, the anti-campylobacter activity of thymol was compared against that of thymol-β-d-glucopyranoside, the latter being resistant to absorption. when treated with 1 mm thymol, campylobacter coli and jejuni were reduced during pure or co-culture with a β-glycoside-hydrolysing parabacteroides dis ...201525465999
antimicrobial activity of gallic acid against thermophilic campylobacter is strain specific and associated with a loss of calcium ions.gallic acid has been suggested as a potential antimicrobial for the control of campylobacter but its effectiveness is poorly studied. the minimum inhibitory concentration (mic) and minimum bactericidal concentration (mbc) of gallic acid against campylobacter jejuni (n = 8) and campylobacter coli (n = 4) strains was determined. gallic acid inhibited the growth of five c. jejuni strains and three c. coli strains (mic: 15.63-250 μg ml(-1)). gallic acid was only bactericidal to two c. coli strains ( ...201525475290
a phylogeny-based sampling strategy and power calculator informs genome-wide associations study design for microbial pathogens.whole genome sequencing is increasingly used to study phenotypic variation among infectious pathogens and to evaluate their relative transmissibility, virulence, and immunogenicity. to date, relatively little has been published on how and how many pathogen strains should be selected for studies associating phenotype and genotype. there are specific challenges when identifying genetic associations in bacteria which often comprise highly structured populations. here we consider general methodologi ...201425484920
transcriptomic and proteomic analyses reveal key innate immune signatures in the host response to the gastrointestinal pathogen campylobacter concisus.pathogenic species within the genus campylobacter are responsible for a considerable burden on global health. campylobacter concisus is an emergent pathogen that plays a role in acute and chronic gastrointestinal disease. despite ongoing research on campylobacter virulence mechanisms, little is known regarding the immunological profile of the host response to campylobacter infection. in this study, we describe a comprehensive global profile of innate immune responses to c. concisus infection in ...201425486993
transcriptomic and proteomic analyses reveal key innate immune signatures in the host response to the gastrointestinal pathogen campylobacter concisus.pathogenic species within the genus campylobacter are responsible for a considerable burden on global health. campylobacter concisus is an emergent pathogen that plays a role in acute and chronic gastrointestinal disease. despite ongoing research on campylobacter virulence mechanisms, little is known regarding the immunological profile of the host response to campylobacter infection. in this study, we describe a comprehensive global profile of innate immune responses to c. concisus infection in ...201425486993
thermal control of virulence factors in bacteria: a hot topic.pathogenic bacteria sense environmental cues, including the local temperature, to control the production of key virulence factors. thermal regulation can be achieved at the level of dna, rna or protein and although many virulence factors are subject to thermal regulation, the exact mechanisms of control are yet to be elucidated in many instances. understanding how virulence factors are regulated by temperature presents a significant challenge, as gene expression and protein production are often ...201425494856
genotypes and antibiotic resistance of bovine campylobacter and their contribution to human campylobacteriosis.campylobacter jejuni and campylobacter coli are the most important bacterial causes of human gastroenteritis. chicken has been recognized as a major source for human infection, whereas cattle might also contribute to a lesser extent. however, there is a paucity of information available regarding campylobacter in swiss cattle and their role for human campylobacteriosis. to gain more information on genotypes and antibiotic resistance of bovine c. jejuni and c. coli and on their contribution to hum ...201525511436
extraintestinal campylobacteriosis in rhesus macaques (macaca mulatta).two cases of clinical disease associated with extraintestinal campylobacter infection were recently encountered in rhesus macaques (macaca mulatta). the first case was that of a 3-y-old, male, rhesus macaque experimentally infected with siv, who presented with abdominal pain and a midabdominal mass and was euthanized. pathology findings included an abscess within the median liver lobe, fibrinopurulent peritonitis, and intestinal serositis with isolation of campylobacter fetus from the blood, liv ...201425527031
seasonality and antibiotic resistance of campylobacter in turkish chicken meat.this study investigated the seasonal prevalence and the antimicrobial susceptibility of campylobacter jejuni and campylobacter coli in 264 samples of chicken meat. the samples encompassed wings (n=88), breasts (n=79) and thighs (n=97) and were purchased from different butcheries and markets in elazig province, in eastern turkey, between december 2009 and november 2010. the meat samples were tested for campylobacter presence and the collected isolates were identified as campylobacter jejuni and c ...201425546065
cj1386, an atypical hemin-binding protein, mediates hemin trafficking to kata in campylobacter jejuni.catalase enzymes detoxify h2o2 by the dismutation of h2o2 into o2 and h2o through the use of hemin cofactors. while the structure and biochemical properties of catalase enzymes have been well characterized over many decades of research, it remained unclear how catalases acquire hemin. we have previously reported that cj1386 is essential for ensuring proper hemin content in campylobacter jejuni catalase (kata) (a. flint, y. q. sun, and a. stintzi, j bacteriol 194: 334-345, 2012). in this report, ...201425548249
cj1386, an atypical hemin-binding protein, mediates hemin trafficking to kata in campylobacter jejuni.catalase enzymes detoxify h2o2 by the dismutation of h2o2 into o2 and h2o through the use of hemin cofactors. while the structure and biochemical properties of catalase enzymes have been well characterized over many decades of research, it remained unclear how catalases acquire hemin. we have previously reported that cj1386 is essential for ensuring proper hemin content in campylobacter jejuni catalase (kata) (a. flint, y. q. sun, and a. stintzi, j bacteriol 194: 334-345, 2012). in this report, ...201425548249
clinical importance and epidemiology of quinolone resistance.the quinolone class of antimicrobial agents is one of most widely used classes of antimicrobial agents in outpatient and inpatient treatment. however, quinolone resistance in gram-positive and gram-negative bacteria has emerged and increased globally. this resistance limits the usefulness of quinolones in clinical practice. the review summarizes mechanisms of quinolone resistance and its epidemiology and implications in the most common clinical settings, urinary tract infections, respiratory tra ...201425566402
laboratory diagnosis of bacterial gastroenteritis.bacterial gastroenteritis is a disease that is pervasive in both the developing and developed worlds. while for the most part bacterial gastroenteritis is self-limiting, identification of an etiological agent by bacterial stool culture is required for the management of patients with severe or prolonged diarrhea, symptoms consistent with invasive disease, or a history that may predict a complicated course of disease. importantly, characterization of bacterial enteropathogens from stool cultures i ...201525567220
[enumeration and antimicrobial resistance of campylobacter species from retail chicken carcasses].to determine campylobacter contamination level and antimicrobial resistance patterns from chicken carcasses in supermarkets and farmer's markets of 9 districts in beijing.201425573127
rapid identification and classification of campylobacter spp. using laser optical scattering technology.campylobacter jejuni and campylobacter coli are the two important species responsible for most of the campylobacter infections in humans. reliable isolation and detection of campylobacter spp. from food samples are challenging due to the interferences from complex food substances and the fastidious growth requirements of this organism. in this study, a novel biosensor-based detection called bardot (bacterial rapid detection using optical scattering technology) was developed for high-throughput s ...201525583335
detection of mycobacteria, mycobacterium avium subspecies, and mycobacterium tuberculosis complex by a novel tetraplex real-time pcr assay.mycobacterium tuberculosis complex, mycobacterium avium, and many other nontuberculous mycobacteria are worldwide distributed microorganisms of major medical and veterinary importance. considering the growing epidemiologic significance of wildlife-livestock-human interrelation, developing rapid detection tools of high specificity and sensitivity is vital to assess their presence and accelerate the process of diagnosing mycobacteriosis. here we describe the development and evaluation of a novel t ...201525588660
bacterial flagella: twist and stick, or dodge across the kingdoms.the flagellum organelle is an intricate multiprotein assembly best known for its rotational propulsion of bacteria. however, recent studies have expanded our knowledge of other functions in pathogenic contexts, particularly adherence and immune modulation, e.g., for salmonella enterica, campylobacter jejuni, pseudomonas aeruginosa, and escherichia coli. flagella-mediated adherence is important in host colonisation for several plant and animal pathogens, but the specific interactions that promote ...201525590430
rapid methods for the detection of foodborne bacterial pathogens: principles, applications, advantages and limitations.the incidence of foodborne diseases has increased over the years and resulted in major public health problem globally. foodborne pathogens can be found in various foods and it is important to detect foodborne pathogens to provide safe food supply and to prevent foodborne diseases. the conventional methods used to detect foodborne pathogen are time consuming and laborious. hence, a variety of methods have been developed for rapid detection of foodborne pathogens as it is required in many food ana ...201425628612
rapid methods for the detection of foodborne bacterial pathogens: principles, applications, advantages and limitations.the incidence of foodborne diseases has increased over the years and resulted in major public health problem globally. foodborne pathogens can be found in various foods and it is important to detect foodborne pathogens to provide safe food supply and to prevent foodborne diseases. the conventional methods used to detect foodborne pathogen are time consuming and laborious. hence, a variety of methods have been developed for rapid detection of foodborne pathogens as it is required in many food ana ...201425628612
phenolic acids profile, antioxidant and antibacterial activity of chamomile, common yarrow and immortelle (asteraceae).chamomile, common yarrow and immortelle ethanolic extracts were chemically analysed with respect to phenolics. twelve phenolic acids were separated and identified by hplc-dad and the presence of rosmarinic acid was additionally confirmed by lc-ms. five methods were applied for the evaluation of extracts' antioxidant properties (frap, dpph, abts, chelating activity, briggs-rauscher reaction), while the antibacterial activity was tested against some of the major food-borne pathogens (campylobacter ...201425632475
comparison of eleven methods for genomic dna extraction suitable for large-scale whole-genome genotyping and long-term dna banking using blood samples.over the recent years, next generation sequencing and microarray technologies have revolutionized scientific research with their applications to high-throughput analysis of biological systems. isolation of high quantities of pure, intact, double stranded, highly concentrated, not contaminated genomic dna is prerequisite for successful and reliable large scale genotyping analysis. high quantities of pure dna are also required for the creation of dna-banks. in the present study, eleven different d ...201525635817
novel gentamicin resistance genes in campylobacter isolated from humans and retail meats in the usa.to understand the molecular epidemiology of gentamicin-resistant campylobacter and investigate aminoglycoside resistance mechanisms.201525645207
structural and functional implications of the interaction between macrolide antibiotics and bile acids.macrolide antibiotics, such as azithromycin and erythromycin, are in widespread use for the treatment of bacterial infections. macrolides are taken up and excreted mainly by bile. additionally, they have been implicated in biliary system diseases and to modify the excretion of other drugs through bile. despite mounting evidence for the interplay between macrolide antibiotics and bile acids, the molecular details of this interaction remain unknown. herein, we show by nmr measurements that macroli ...201525655041
antimicrobial resistance in campylobacter coli and campylobacter jejuni in cynomolgus monkeys (macaca fascicularis) and eradication regimens.campylobacter spp. are zoonotic pathogens, however, knowledge about their presence and antimicrobial resistance in nonhuman primates is limited. our animal facility purchased cynomolgus monkeys (macaca fascicularis) from various asian countries: china, cambodia, indonesia, the philippines, and vietnam.201725683191
environmental monitoring of waterborne campylobacter: evaluation of the australian standard and a hybrid extraction-free mpn-pcr method.campylobacter is the leading agent of diarrheal disease worldwide. this study evaluates a novel culture-pcr hybrid (mpn-pcr) assay for the rapid enumeration of campylobacter spp. from estuarine and wastewater systems. to first evaluate the current, culture-based, australian standard, an inter-laboratory study was conducted on 69 subsampled water samples. the proposed most-probable number (mpn)-pcr method was then evaluated, by analysing 147 estuarine samples collected over a 2 year period. data ...201525709604
survival after cryogenic freezing of campylobacter species in ground turkey patties treated with polyphosphates.the use of polyphosphate-based marinades in the processing of poultry has been previously shown to increase the survival of campylobacter species present in the exudates derived from these products. this study investigates the effects that some of the same polyphosphates have on the survival of campylobacter species within a ground turkey product subjected to cryogenic freezing. ground turkey patties with two different polyphosphate formulations added in two different concentrations were artific ...201525710161
identification of campylobacter species isolates with phenotypic methods and polymerase chain reaction.campylobacter jejuni (c. jejuni) and campylobacter coli (c. coli) are the most common bacterial causes of enterocolitis in humans. however, identification of the species level is not always possible using standard biochemical tests.201525731001
characteristics of metroxylon sagu resistant starch type iii as prebiotic substance.resistant starch type iii (rs3 ) was produced from sago (metroxylon sagu) and evaluated for its characteristics as a prebiotic. two rs3 samples designated sago rs and hcl-sago rs contained 35.71% and 68.30% rs, respectively, were subjected to hydrolyses by gastric juice and digestive enzymes and to absorption. both sago rs and hcl-sago rs were resistant to 180 min hydrolysis by gastric acidity at ph 1 to 4 with less than 0.85% hydrolyzed. both samples were also resistant toward hydrolysis by gas ...201525739421
multicenter evaluation of the bd max enteric bacterial panel pcr assay for rapid detection of salmonella spp., shigella spp., campylobacter spp. (c. jejuni and c. coli), and shiga toxin 1 and 2 genes.diarrhea due to enteric bacterial pathogens causes significant morbidity and mortality in the united states and worldwide. however, bacterial pathogens may be infrequently identified. currently, culture and enzyme immunoassays (eias) are the primary methods used by clinical laboratories to detect enteric bacterial pathogens. we conducted a multicenter evaluation of the bd max enteric bacterial panel (ebp) pcr assay in comparison to culture for the detection of salmonella spp., shigella spp., cam ...201525740779
molecular-based approaches to characterize coastal microbial community and their potential relation to the trophic state of red sea.molecular-based approaches were used to characterize the coastal microbiota and to elucidate the trophic state of red sea. nutrient content and enterococci numbers were monitored, and used to correlate with the abundance of microbial markers. microbial source tracking revealed the presence of >1 human-associated bacteroides spp. at some of the near-shore sampling sites and at a heavily frequented beach. water samples collected from the beaches had occasional exceedances in enterococci numbers, h ...201525758166
detection of thermophilic campylobacter sp. in raw chicken sausages by methods iso 10272: 2006 in curitiba - parana state - brazil.the aim of this study was the detection of campylobacter sp. in raw chicken sausages using the methods iso 10272-1 and iso 10272-2. the overall prevalence of campylobacter sp. in the samples tested was 16.67%, representing a serious risk to the health of consumers, particularly if measures guaranteeing proper cooking of foods and prevention of cross-contamination are not adopted. furthermore, the majority of campylobacteriosis cases in humans are caused by consumption or improper handling of con ...201525763066
detection of thermophilic campylobacter sp. in raw chicken sausages by methods iso 10272: 2006 in curitiba - parana state - brazil.the aim of this study was the detection of campylobacter sp. in raw chicken sausages using the methods iso 10272-1 and iso 10272-2. the overall prevalence of campylobacter sp. in the samples tested was 16.67%, representing a serious risk to the health of consumers, particularly if measures guaranteeing proper cooking of foods and prevention of cross-contamination are not adopted. furthermore, the majority of campylobacteriosis cases in humans are caused by consumption or improper handling of con ...201525763066
higher resistance of campylobacter coli compared to campylobacter jejuni at chicken slaughterhouse.in order to compare the prevalence of campylobacter coli and campylobacter jejuni during the processing of broilers at slaughterhouse a total of 848 samples were analyzed during 2012 in southern spain. four hundred and seventy six samples were collected from cloaca, carcass surfaces and quartered carcasses. moreover, 372 environmental swabs from equipment and scalding water were collected. minimum inhibitory concentration (mic) to ciprofloxacin, erythromycin, streptomycin, tetracycline and genta ...201525770597
the challenge of efflux-mediated antibiotic resistance in gram-negative bacteria.the global emergence of multidrug-resistant gram-negative bacteria is a growing threat to antibiotic therapy. the chromosomally encoded drug efflux mechanisms that are ubiquitous in these bacteria greatly contribute to antibiotic resistance and present a major challenge for antibiotic development. multidrug pumps, particularly those represented by the clinically relevant acrab-tolc and mex pumps of the resistance-nodulation-division (rnd) superfamily, not only mediate intrinsic and acquired mult ...201525788514
effect of exposure to stress conditions on propidium monoazide (pma)-qpcr based campylobacter enumeration in broiler carcass rinses.campylobacter quantification by qpcr is unable to distinguish viable vs. dead cells in contrast to the culture-based iso 10272-2 reference method. propidium monoazide (pma) has been used to overcome this disadvantage. a campylobacter pma-qpcr enumeration method was evaluated for its consistency and compared to the culture-based enumeration for both artificially and natural contaminated broiler carcass rinses. the pma effect was further evaluated on stressed cells. five conditions, commonly encou ...201525791007
a prospective multi-center observational study of children hospitalized with diarrhea in ho chi minh city, vietnam.we performed a prospective multicenter study to address the lack of data on the etiology, clinical and demographic features of hospitalized pediatric diarrhea in ho chi minh city (hcmc), vietnam. over 2,000 (1,419 symptomatic and 609 non-diarrheal control) children were enrolled in three hospitals over a 1-year period in 2009-2010. aiming to detect a panel of pathogens, we identified a known diarrheal pathogen in stool samples from 1,067/1,419 (75.2%) children with diarrhea and from 81/609 (13.3 ...201525802437
the epidemiology and aetiology of diarrhoeal disease in infancy in southern vietnam: a birth cohort study.previous studies indicate a high burden of diarrhoeal disease in vietnamese children, however longitudinal community-based data on burden and aetiology are limited. the findings from a large, prospective cohort study of diarrhoeal disease in infants in southern vietnam are presented herein.201525813553
microbial contamination of drinking water and human health from community water systems.a relatively short list of reference viral, bacterial and protozoan pathogens appears adequate to assess microbial risks and inform a system-based management of drinking waters. nonetheless, there are data gaps, e.g. human enteric viruses resulting in endemic infection levels if poorly performing disinfection and/or distribution systems are used, and the risks from fungi. where disinfection is the only treatment and/or filtration is poor, cryptosporidiosis is the most likely enteric disease to b ...201525821716
coiled coil rich proteins (ccrp) influence molecular pathogenicity of helicobacter pylori.pathogenicity of the human pathogen helicobacter pylori relies on its capacity to adapt to a hostile environment and to escape the host response. although there have been great advances in our understanding of the bacterial cytoskeleton, major gaps remain in our knowledge of its contribution to virulence. in this study we have explored the influence of coiled coil rich proteins (ccrp) cytoskeletal elements on pathogenicity factors of h. pylori. deletion of any of the ccrp resulted in a strongly ...201525822999
first case report of campylobacter volucris bacteremia in an immunocompromised patient.we report a case of campylobacter volucris bacteremia in an immunocompromised patient with polycythemia vera and alcoholic liver cirrhosis. to our knowledge, this is the first case report in which this organism has been isolated from a human clinical specimen.201525832303
a five-year study on prevalence and antimicrobial resistance of campylobacter from poultry carcasses in poland.during 2009-2013 a total of 2114 swab samples collected from broiler carcasses in all 16 voivodeships (administrative districts) of poland were examined for the presence of campylobacter jejuni and campylobacter coli. the antimicrobial resistance of the isolates to ciprofloxacin, tetracycline and erythromycin using the mic method was also tested. it was found that 1151 (54.4%) carcasses were contaminated with campylobacter, with 50% of c. jejuni and c. coli species isolated from positive samples ...201525846926
narrow-spectrum inhibitors of campylobacter jejuni flagellar expression and growth.campylobacter jejuni is a major cause of food-borne illness due to its ability to reside within the gastrointestinal tracts of chickens. multiple studies have identified the flagella of c. jejuni as a major determinant of chicken colonization. an inhibitor screen of approximately 147,000 small molecules was performed to identify compounds that are able to inhibit flagellar expression in a reporter strain of c. jejuni. several compounds that modestly inhibited motility of wild-type c. jejuni in s ...201525870073
development of transient phage resistance in campylobacter coli against the group ii phage cp84.recently, there is a growing interest in the use of bacteriophages for pre- and post-harvest applications to reduce foodborne pathogens (including campylobacter) along the food chain. quantitative campylobacter reductions of up to three log10 units have been achieved by phage application. however, possible phage resistance might limit this approach. in campylobacter (c.) jejuni, phage resistance mechanisms have been described in detail but data on these mechanisms in c. coli are still missing. t ...201525876274
agriculture and food animals as a source of antimicrobial-resistant bacteria.one of the major breakthroughs in the history of medicine is undoubtedly the discovery of antibiotics. their use in animal husbandry and veterinary medicine has resulted in healthier and more productive farm animals, ensuring the welfare and health of both animals and humans. unfortunately, from the first use of penicillin, the resistance countdown started to tick. nowadays, the infections caused by antibiotic-resistant bacteria are increasing, and resistance to antibiotics is probably the major ...201525878509
comprehensive mapping of o-glycosylation in flagellin from campylobacter jejuni 11168: a multienzyme differential ion mobility mass spectrometry approach.glycosylation of flagellin is essential for the virulence of campylobacter jejuni, a leading cause of bacterial gastroenteritis. here, we demonstrate comprehensive mapping of the o-glycosylation of flagellin from campylobacter jejuni 11168 by use of a bottom-up proteomics approach that incorporates differential ion mobility spectrometry (also known as high field asymmetric waveform ion mobility spectrometry or faims) together with proteolysis with proteinase k. proteinase k provides complementar ...201525884275
epidemiology of norovirus infections among diarrhea outpatients in a diarrhea surveillance system in shanghai, china: a cross-sectional study.norovirus is an important cause of gastroenteritis both in children and adults. in china, few studies have been conducted on adult populations. this study aimed to determine the contribution of norovirus to gastroenteritis, characterize the features of norovirus infections, compare them with other pathogens, and test the effectiveness of the surveillance system.201525884557
clear distinction between burkholderia mallei and burkholderia pseudomallei using fluorescent motb primers.a frame-shift mutation in the flagellum motor gene motb coding for the chemotaxis motb protein of burkholderia mallei has been utilized to design a conventional duplex pcr assay with fluorescent labelled primers.201525887130
genome comparison provides molecular insights into the phylogeny of the reassigned new genus lysinibacillus.lysinibacillus sphaericus (formerly named bacillus sphaericus) is incapable of polysaccharide utilization and some isolates produce active insecticidal proteins against mosquito larvae. its taxonomic status was changed to the genus lysinibacillus in 2007 with some other organisms previously regarded as members of bacillus. however, this classification is mainly based on physiology and phenotype and there is limited genomic information to support it.201525888315
heat shock-enhanced conjugation efficiency in standard campylobacter jejuni strains.campylobacter jejuni, the leading bacterial cause of human gastroenteritis in the united states, displays significant strain diversity due to horizontal gene transfer. conjugation is an important horizontal gene transfer mechanism contributing to the evolution of bacterial pathogenesis and antimicrobial resistance. it has been observed that heat shock could increase transformation efficiency in some bacteria. in this study, the effect of heat shock on c. jejuni conjugation efficiency and the und ...201525911489
impact of oxidative stress defense on bacterial survival and morphological change in campylobacter jejuni under aerobic conditions.campylobacter jejuni, a microaerophilic foodborne pathogen, inescapably faces high oxygen tension during its transmission to humans. thus, the ability of c. jejuni to survive under oxygen-rich conditions may significantly impact c. jejuni viability in food and food safety as well. in this study, we investigated the impact of oxidative stress resistance on the survival of c. jejuni under aerobic conditions by examining three mutants defective in key antioxidant genes, including ahpc, kata, and so ...201525914692
towards fluorescence in vivo hybridization (fivh) detection of h. pylori in gastric mucosa using advanced lna probes.in recent years, there have been several attempts to improve the diagnosis of infection caused by helicobacter pylori. fluorescence in situ hybridization (fish) is a commonly used technique to detect h. pylori infection but it requires biopsies from the stomach. thus, the development of an in vivo fish-based method (fivh) that directly detects and allows the visualization of the bacterium within the human body would significantly reduce the time of analysis, allowing the diagnosis to be performe ...201525915865
la35 poultry fecal marker persistence is correlated with that of indicators and pathogens in environmental waters.disposal of fecally contaminated poultry litter by land application can deliver pathogens and fecal indicator bacteria (fib) into receiving waters via runoff. while water quality is regulated by fib enumeration, fib testing provides inadequate information about contamination source and health risk. this microbial source tracking (mst) study compared the persistence of the brevibacterium sp. strain la35 16s rrna gene (marker) for poultry litter with that of pathogens and fib under outdoor, enviro ...201525934617
prevalence of campylobacter spp. in retail chicken, turkey, pork, and beef meat in poland between 2009 and 2013.the purpose of the present study was to determine the prevalence of thermophilic campylobacter in poultry, pork, and beef meat at the retail level and to identify the main categories of meat representing the most significant reservoirs of campylobacter. a monitoring study was conducted throughout poland from 2009 to 2013. a total of 1,700 fresh meat samples were collected from supermarkets, large retail outlets, and smaller stores. thermophilic campylobacter species were detected in 690 (49.3%) ...201525951401
a community-based gastroenteritis outbreak after typhoon haiyan, leyte, philippines, 2013.three weeks after typhoon haiyan, an increasing number of acute gastroenteritis cases were reported in kananga, leyte, an area where evacuated residents had returned home two days after the disaster. an outbreak investigation was conducted to identify the source and risk factors associated with the increase of gastroenteritis.201525960917
detection of multi-drug resistant escherichia coli in the urban waterways of milwaukee, wi.urban waterways represent a natural reservoir of antibiotic resistance which may provide a source of transferable genetic elements to human commensal bacteria and pathogens. the objective of this study was to evaluate antibiotic resistance of escherichia coli isolated from the urban waterways of milwaukee, wi compared to those from milwaukee sewage and a clinical setting in milwaukee. antibiotics covering 10 different families were utilized to determine the phenotypic antibiotic resistance for a ...201525972844
multiplex polymerase chain reaction tests for detection of pathogens associated with gastroenteritis.a wide range of enteric pathogens can cause infectious gastroenteritis. conventional diagnostic algorithms are time-consuming and often lack sensitivity and specificity. advances in molecular technology have provided new clinical diagnostic tools. multiplex polymerase chain reaction (pcr)-based testing has been used in gastroenterology diagnostics in recent years. this article presents a review of recent laboratory-developed multiplex pcr tests and current commercial multiplex gastrointestinal p ...201526004652
microbiological survey of birds of prey pellets.a microbiological survey of 73 pellets collected from different birds of prey species housed at the wildlife rescue and rehabilitation center of napoli (southern italy) was performed. pellets were analyzed by culture and biochemical methods as well as by serotyping and polymerase chain reaction. we isolated a wide range of bacteria some of them also pathogens for humans (i.e. salmonella enterica serotype typhimurium, campylobacter coli, escherichia coli o serogroups). this study highlights the p ...201526026881
virulence genes and cytokine profile in systemic murine campylobacter coli infection.campylobacter coli are one of the most common bacteria in bacterial gastroenteritis and acute enterocolitis in humans. however, relatively little is known regarding the mechanisms of pathogenesis and host response to c. coli infections. to investigate the influence of genetic changes, we first used pcr to demonstrate the presence of the known virulence genes cadf, virb11, cdtb, cdtc and ceue in the clinical isolate c. coli 26536, which was isolated from the liver of infected balb/c mice. sequenc ...201526039573
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