| australia | new south wales | candidatus synechococcus spongiarum | species | 1 | 0 |
| australia | queensland | candidatus synechococcus spongiarum | species | 1 | 0 |
| australia | western australia | candidatus synechococcus spongiarum | species | 7 | 1 |
| bahamas | | candidatus synechococcus spongiarum 604sc1 | no rank | 1 | 0 |
| bahamas | | candidatus synechococcus spongiarum 607sc1 | no rank | 1 | 0 |
| bahamas | | candidatus synechococcus spongiarum 614sc3 | no rank | 1 | 0 |
| bahamas | | candidatus synechococcus spongiarum 621sc1 | no rank | 1 | 0 |
| bahamas | | candidatus synechococcus spongiarum 625sc1 | no rank | 1 | 0 |
| bahamas | | candidatus synechococcus spongiarum 634sc3 | no rank | 1 | 0 |
| bermuda | | candidatus synechococcus spongiarum 632sc1 | no rank | 1 | 0 |
| bermuda | | candidatus synechococcus spongiarum 735sc1 | no rank | 1 | 0 |
| china | | candidatus synechococcus spongiarum | species | 6 | 0 |
| france | | candidatus synechococcus spongiarum | species | 3 | 0 |
| italy | | candidatus synechococcus spongiarum | species | 1 | 0 |
| palau | | candidatus synechococcus spongiarum 628sc4 | no rank | 1 | 0 |
| palau | | candidatus synechococcus spongiarum 630sc1 | no rank | 1 | 0 |
| palau | | candidatus synechococcus spongiarum p123sc1 | no rank | 1 | 0 |
| palau | | candidatus synechococcus spongiarum p129sc1 | no rank | 1 | 0 |
| palau | | candidatus synechococcus spongiarum p138sc1 | no rank | 1 | 0 |
| slovenia | | candidatus synechococcus spongiarum 15l | no rank | 1 | 0 |
| slovenia | municipality of piran | candidatus synechococcus spongiarum 15l | no rank | 230 | 0 |
| slovenia | municipality of piran | candidatus synechococcus spongiarum lmb bulk15m | no rank | 85 | 0 |
| slovenia | municipality of piran | candidatus synechococcus spongiarum lmb bulk15n | no rank | 183 | 0 |
| spain | | candidatus synechococcus spongiarum mb031sc1 | no rank | 1 | 0 |